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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_86538_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 122aa MW: 13595.3 Da PI: 6.7918 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.6e-05 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H cra_locus_86538_iso_1_len_363_ver_3 4 HECSYCGAEFTSGQALGGHMRRH 26 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 2 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.61E-6 | 2 | 29 | No hit | No description |
Pfam | PF13912 | 2.4E-13 | 3 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.367 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0098 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
XKVHECSYCG AEFTSGQALG GHMRRHRGGV NIITSNNNAT NTNLSLSPIS PASIDQEIID 60 HEIEAKKSRK SSYGLSLDLN LPPTDDHHQR ENVFTFASSK QQQPEEQAQK QQKGNNQEQE 120 KX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196059.1 | 5e-24 | C2H2-type zinc finger family protein | ||||
Refseq | XP_027115655.1 | 7e-24 | zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 6e-15 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A178UR51 | 9e-23 | A0A178UR51_ARATH; Uncharacterized protein | ||||
STRING | AT5G04390.1 | 2e-23 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4015 | 23 | 43 |
Publications ? help Back to Top | |||
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