PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_8608_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 329aa MW: 37585.7 Da PI: 7.0177

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8608_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.5e-12	192	217	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y lC+++ +tG+C yGd+CkF H+ cra_locus_8608_iso_1_len_1426_ver_3 192 YQPDLCKDYKETGYCGYGDSCKFLHD 217 6789*********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.83E-9	190	222	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.028	191	219	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-7	191	218	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.7E-13	192	222	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.8E-10	192	217	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.30.40.10	4.2E-13	254	310	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57850	6.6E-13	268	311	No hit	No description
Pfam	PF13920	3.6E-8	268	311	No hit	No description
CDD	cd00162	1.20E-7	269	310	No hit	No description
SMART	SM00184	1.0E-4	269	306	IPR001841	Zinc finger, RING-type
PROSITE profile	PS50089	10.365	269	307	IPR001841	Zinc finger, RING-type
PROSITE pattern	PS00518	0	284	293	IPR017907	Zinc finger, RING-type, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MADSDEPKQQ QPQEQVCSFF KKPSKAKNIR KRPAIEHGED GNEDAKDESS VTFNKKKQVM 60 PDNKLHFSTG PTKRSVNKES EEDSKTPFFQ FESSKEIQVQ NDSRATATLE TETEFSRDSR 120 AIRERALKRA EEALKGKSTS SGGEKLYSGM HGYTDYKAGF RREQTIAAEK AGGAHGPLRA 180 SAHIRVSARF DYQPDLCKDY KETGYCGYGD SCKFLHDRGD YKSGWQLEKE WDEKEKERKR 240 NIALGIEDED EGPAERSDED EDDSLPFACF ICREAFQEPV VTRCKHYFCL HCALKHHARN 300 KKCYVCDQPT NGIFNTAFEI LKKKSAQEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	2e-68	14	323	12	316	RING finger protein 113A
5z58_M	2e-68	14	323	12	316	RING finger protein 113A
6ff4_t	2e-68	14	323	12	316	RING finger protein 113A
6ff7_t	2e-68	14	323	12	316	RING finger protein 113A
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027177265.1	0.0	zinc finger CCCH domain-containing protein 1-like
Swissprot	Q8GX84	1e-153	C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBL	A0A068UR94	0.0	A0A068UR94_COFCA; Uncharacterized protein
STRING	XP_009609000.1	1e-177	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4403	23	37