PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

cra_locus_8584_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 181aa MW: 20193.1 Da PI: 5.2519

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8584_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.4	7.5e-41	9	105	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG 75 +CaaCk+lrr+C ++C++ pyfp ++p+kfa+vh++FGasn++kll+++p e+r+da++s+vyeA ar+rdPvyG cra_locus_8584_iso_2_len_802_ver_3 9 PCAACKILRRRCDENCIFLPYFPPTEPHKFAAVHRIFGASNITKLLQEIPVEDRDDAVTSMVYEATARLRDPVYG 83 7************************************************************************ PP DUF260 76 avgvilklqqqleqlkaelall 97 +vg+i +lq+++ +l++el+++ cra_locus_8584_iso_2_len_802_ver_3 84 CVGLIASLQKHVFRLQSELNAA 105 ****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.68	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-41	9	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MASSRNLMPC AACKILRRRC DENCIFLPYF PPTEPHKFAA VHRIFGASNI TKLLQEIPVE 60 DRDDAVTSMV YEATARLRDP VYGCVGLIAS LQKHVFRLQS ELNAALAETM ALRTQLSDAL 120 TIRLTTSPPP RAFSVGSENN FSGLIDHQLV NEFNNCFTNN PFDAMLEESC QASEIVPEIP 180 F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-45	9	110	11	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-45	9	110	11	112	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242472.2	1e-64	LOB domain-containing protein 24-like isoform X2
Swissprot	Q8LBW3	2e-46	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3Q7H1C1	2e-61	A0A3Q7H1C1_SOLLC; Uncharacterized protein
STRING	Solyc06g082770.2.1	4e-62	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]