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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8501_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26349 Da PI: 9.7494 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.4 | 4.5e-29 | 56 | 106 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrngi+KKA+ELSvLCda+v++i++s t k++ey s cra_locus_8501_iso_1_len_913_ver_3 56 KKIENSTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMLSGTKKFHEYTS 106 68***********************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.539 | 48 | 108 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-38 | 48 | 107 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.49E-36 | 49 | 116 | No hit | No description |
SuperFamily | SSF55455 | 4.97E-30 | 49 | 119 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 50 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 50 | 104 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-23 | 57 | 104 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 70 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-26 | 85 | 106 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
XKGLLSLNPF PVSTSDIIPP NPYXPKLSLV DFPVADPSID RVSEEGIMGR GRIEIKKIEN 60 STNRQVTYSK RRNGIFKKAH ELSVLCDAKV SLIMLSGTKK FHEYTSPSTT TKTIIDQXXX 120 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK LIPSXKKVRN LEERHGNLLF 180 DIEAKCEDPK YGIVENAYNN SSTVALVDGV ASNLYAFSLQ PRHPNLHHGL RLT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-15 | 48 | 107 | 1 | 60 | MEF2C |
5f28_B | 6e-15 | 48 | 107 | 1 | 60 | MEF2C |
5f28_C | 6e-15 | 48 | 107 | 1 | 60 | MEF2C |
5f28_D | 6e-15 | 48 | 107 | 1 | 60 | MEF2C |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870777.1 | 5e-47 | floral homeotic protein PMADS 1-like | ||||
Swissprot | Q003J2 | 6e-33 | TM6_VITVI; Agamous-like MADS-box protein TM6 |
Publications ? help Back to Top | |||
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