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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8377_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WOX | ||||||||
Protein Properties | Length: 182aa MW: 20891.9 Da PI: 10.8254 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.2 | 1.1e-21 | 81 | 140 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ cra_locus_8377_iso_1_len_1147_ver_3 81 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITAQLgkygKIEGKNVFYWFQNHKARERQ 140 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 119.1 | 2e-38 | 81 | 142 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L +yGkie+kNVfyWFQN+kaRerqkq cra_locus_8377_iso_1_len_1147_ver_3 81 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQ 142 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.187 | 76 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-13 | 78 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-7 | 78 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.82E-5 | 81 | 142 | No hit | No description |
Pfam | PF00046 | 2.1E-19 | 81 | 140 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-8 | 82 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MKVHQFARGF WDQQHEPPSL TLGCKRLRPL APKLQTSGTD TAPFDLKSFI RPESGPRKLG 60 SPDDKREPAA IHQVETHPGG TRWNPTQEQI GILEMLYRGG MRTPNAQQIE QITAQLGKYG 120 KIEGKNVFYW FQNHKARERQ KQKRNTTLAL NHSPRSTAPH LTITNPLTQD IRVRIFVMDF 180 MI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017177.1 | 2e-88 | PREDICTED: WUSCHEL-related homeobox 4 | ||||
Refseq | XP_015884316.1 | 2e-88 | WUSCHEL-related homeobox 4 | ||||
Swissprot | Q6X7J9 | 1e-69 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A061FCE5 | 4e-87 | A0A061FCE5_THECC; WUSCHEL related homeobox 4 | ||||
STRING | EOY14402 | 8e-88 | (Theobroma cacao) |