PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8366_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family EIL
Protein Properties Length: 541aa    MW: 62563.4 Da    PI: 4.7625
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8366_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3144.81.2e-441102111111
                                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvY 74 
                                          ++lkkrmwkd+m +++lk ++       e++ +       ++ ++rkkm+raQD+iLkYM+k+mevcnaqGfvY
  cra_locus_8366_iso_4_len_1685_ver_3 110 DDLKKRMWKDRMHMQKLKAQRPI----PEPDPQ-----AKEDISKRKKMARAQDSILKYMVKIMEVCNAQGFVY 174
                                          79*************99998885....455333.....34688899**************************** PP

                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                                 EIN3  75 giipekgkpvegasdsLraWWkekvefdrngpaaisk 111
                                          gi+pekgk+v+g+sdsLr+WWk+kv+fd+n+paai++
  cra_locus_8366_iso_4_len_1685_ver_3 175 GIVPEKGKTVTGSSDSLREWWKDKVRFDQNAPAAIAE 211
                                          ***********************************97 PP
2EIN3126.73.8e-39226380177353
                                          --HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHH CS
                                 EIN3 177 kelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvl 250
                                          +elwwge+g+++++g+ppykkphdlkkawkv++L++ ikhm+p++++ir+l+ qsk lqdkm++++++++++vl
  cra_locus_8366_iso_4_len_1685_ver_3 226 EELWWGEQGTAHEHGAPPYKKPHDLKKAWKVTLLSSIIKHMAPDFNRIRRLVKQSKILQDKMTSRDTATWSKVL 299
                                          79************************************************************************ PP

                                          TTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX. CS
                                 EIN3 251 nqeekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsske 324
                                          nqee++++        l   ++++++s +++ d eg++e          + ++++  +krk     +++ +++ 
  cra_locus_8366_iso_4_len_1685_ver_3 300 NQEESLIQ--------L--AQRSLKISPSNE-DEEGEQEDL--------ALTKVSGSEKRK-CVFVPEAREDT- 352
                                          ****9883........2..456677887754.666666666........222455566776.34444454444. PP

                                          .....XXXXXXX.XXXXXXXXXXXXXXXX CS
                                 EIN3 325 vsrtcqssqfrgsetelifadknsisqne 353
                                              cq+  +++s++  +f dkns++q+e
  cra_locus_8366_iso_4_len_1685_ver_3 353 -LFACQNFLCPESDVCSGFVDKNSRTQHE 380
                                          .79************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.6E-44110212No hitNo description
Gene3DG3DSA:1.10.3180.101.4E-34226309IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048736.0E-29226303No hitNo description
SuperFamilySSF1167682.88E-30226306IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
XHSSDEYPRE GKSVQTMVTA DMREPELVYP WIFLDMKIIH SHRHSSSLFK PSYLCEFSRT  60
KLYFALIIRV IVFVSVKAKM VKFDEEIFEP LSPSSEIEDQ EFEAEDISYD DLKKRMWKDR  120
MHMQKLKAQR PIPEPDPQAK EDISKRKKMA RAQDSILKYM VKIMEVCNAQ GFVYGIVPEK  180
GKTVTGSSDS LREWWKDKVR FDQNAPAAIA EFLXXXXATA MVADWEELWW GEQGTAHEHG  240
APPYKKPHDL KKAWKVTLLS SIIKHMAPDF NRIRRLVKQS KILQDKMTSR DTATWSKVLN  300
QEESLIQLAQ RSLKISPSNE DEEGEQEDLA LTKVSGSEKR KCVFVPEARE DTLFACQNFL  360
CPESDVCSGF VDKNSRTQHE KLCTYRPADE NISGLDLQIY ENEFSPDHPE SIVSYEQQHQ  420
SDNIAEIVQE VNRTLELPIF YSGHNNEVDF LPNQETMVSN GRQLQELDWM DLVLPENEAN  480
IAEVVQELNK NVDYRNYLIG ISENTMDLNL NISPLEEALR SSTQLNTPSV WDLAYIDEEQ  540
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-2722630547126Protein ETHYLENE INSENSITIVE 3
4zds_B4e-2722630547126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177617.11e-129LOW QUALITY PROTEIN: putative ETHYLENE INSENSITIVE 3-like 4 protein
RefseqXP_027177620.11e-129LOW QUALITY PROTEIN: putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLK7L6K01e-114K7L6K0_SOYBN; Uncharacterized protein
STRINGGLYMA08G14630.21e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30423178