PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8285_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 346aa    MW: 37906.2 Da    PI: 4.7775
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8285_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.61.1e-15210246135
                                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                          C +Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  cra_locus_8285_iso_6_len_1442_ver_3 210 CNHCGVSEneTPAMRRGPAGPRTLCNACGLMWANKGT 246
                                          **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.43274109IPR010399Tify domain
SMARTSM009794.2E-874109IPR010399Tify domain
PfamPF062004.4E-1177108IPR010399Tify domain
PfamPF062031.6E-15143185IPR010402CCT domain
PROSITE profilePS5101713.106143185IPR010402CCT domain
SuperFamilySSF577162.0E-11202254No hitNo description
SMARTSM004013.2E-11204257IPR000679Zinc finger, GATA-type
CDDcd002021.75E-15209256No hitNo description
Gene3DG3DSA:3.30.50.102.6E-14209251IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
PfamPF003201.4E-13210246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MESLNVRPFQ PMRFHEENAN WPIRVDEDGG GFGGLDVTGG GADEPISGGG EDVHAVSSVP  60
MSNSVNFTSG ASSVASRTSE LTISFEGEVY VFPAVTPEKV QAVLLLLGGR DKPSSSVSAT  120
GFLLQQNIKV LDDDSGKPSV SRRIASLLRF REKRKERCFE KKIRYTCRKE VAQRMHRKNG  180
QFASSKETVE TTDKNLYHGT RAEGHVLQRC NHCGVSENET PAMRRGPAGP RTLCNACGLM  240
WANKGTLRDL SKGAKPSPFD QSELDMSDIK SCMMETENSY HNQNEEDLLE AAEGLAEDSS  300
IVMGNPSMKL DDQENLEELA NASGSELEIP ANFDEQVWLS SNPDLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106173.11e-142GATA transcription factor 19-like isoform X2
SwissprotQ8GXL73e-60GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A068TMB91e-141A0A068TMB9_COFCA; Uncharacterized protein
STRINGXP_009776483.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]