PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_8265_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

DBB

Protein Properties

Length: 273aa MW: 30736.5 Da PI: 6.0924

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8265_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.2	1.4e-07	4	34	5	35
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +e+ ++lfC ++ lC++C ++ Hk cra_locus_8265_iso_3_len_1172_ver_3 4 LCDVCESAAAILFCAADEAALCRSCDDKVHK 34 7***************************995 PP
2	zf-B_box	27.2	8.1e-09	54	91	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ ++ ++Ce +++ lC +C + H g H cra_locus_8265_iso_3_len_1172_ver_3 54 PRCDICENAPAFFYCEVDGSSLCLQCDMIVHVGgkrtH 91 89**************************9995544455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.04	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	2.4E-7	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.35E-5	3	34	No hit	No description
Pfam	PF00643	1.9E-6	3	42	IPR000315	B-box-type zinc finger
SuperFamily	SSF57845	7.55E-5	48	87	No hit	No description
SMART	SM00336	1.1E-9	51	96	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	8.745	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	6.1E-7	54	85	IPR000315	B-box-type zinc finger
CDD	cd00021	1.24E-6	54	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDD KVHKCNKLAS RHLRVGLATP IDVPRCDICE 60 NAPAFFYCEV DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEVXISLPAE CNSSFCNPDL 120 LMRFILLTWP KFPGDKPVRI EEQAIQPIDL SENKREYTRP QKPTGGDIQQ NHIVPFVPKS 180 DVDADEHAKM ETEMIDLNMK PCRLHGQASN NQDLXLWEPF CSKKLSRPIE EESRSKSSIY 240 FHSSAFSRTF SAAACEIGLL PKFPXEMSDL VDQ

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027179448.1	3e-98	B-box zinc finger protein 19-like isoform X1
Swissprot	C0SVM5	3e-64	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	A0A068U0R8	1e-95	A0A068U0R8_COFCA; Uncharacterized protein
STRING	EOX90902	5e-92	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3175	23	40