PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

cra_locus_8255_iso_6

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB_related

Protein Properties

Length: 532aa MW: 59114.4 Da PI: 9.8515

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_8255_iso_6	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	414	462	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lv++v+++G g+W+ I r Rt ++k++w+++l cra_locus_8255_iso_6_len_2342_ver_3 414 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 462 8**************************9999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.092	407	466	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.8E-13	409	467	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-8	411	464	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-16	413	470	IPR009057	Homeodomain-like
CDD	cd11660	3.70E-18	413	463	No hit	No description
Pfam	PF00249	9.9E-7	414	462	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MERREAKRIR KPTKRYIEET SDVGSRESNG RLVSLVELGK RIAHQEESTR SEGMNTSQSQ 60 NLEACSSSQG RSIGIDASTS GGSITKPDFS MLKGEICLDN LSIKDLQETF KATFGRETSV 120 KDKQWLKRRI AMGLTNSCDF STTTFIIEDN RVVKMFKGET SKSSAASEDL IAEAGNQTSG 180 GLTDVCDKEI NVHSDSDAKR PESSLLECNS VGEDPNVEQR VAKRVRKPTK RYIEEISEGE 240 SRESSGRMIT LVRSPESGQQ SAKSVVRPFH HSQQEGRPTV TRQDSFGGSG VQVPFVSRVR 300 RSRPRENFMT LAKLQLDDIG TSAKVVKKAF EEPARMAHDD AGNNVLKASL SPKWIGQPLI 360 AVSEEGKHHP ERIVEHENDI ELKSMNSFGY KSDDSNVVNM PAPMGGMRRK HHRPWSLTEV 420 VKLVEGVARY GAGRWSEIKR LAFASYSYRT SVDLKDKWRN LLRASLTQLP AENGMQNSRK 480 HASIPIPAPI LLRVRELAET QAQVPPNISS SKFAGHSGGT DRNSQETRPG YL

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MERREAKRIR KPTKRYIEET SDVGSRESNG RLVSLVELGK RIAHQEESTR SEGMNTSQSQ  60
NLEACSSSQG RSIGIDASTS GGSITKPDFS MLKGEICLDN LSIKDLQETF KATFGRETSV  120
KDKQWLKRRI AMGLTNSCDF STTTFIIEDN RVVKMFKGET SKSSAASEDL IAEAGNQTSG  180
GLTDVCDKEI NVHSDSDAKR PESSLLECNS VGEDPNVEQR VAKRVRKPTK RYIEEISEGE  240
SRESSGRMIT LVRSPESGQQ SAKSVVRPFH HSQQEGRPTV TRQDSFGGSG VQVPFVSRVR  300
RSRPRENFMT LAKLQLDDIG TSAKVVKKAF EEPARMAHDD AGNNVLKASL SPKWIGQPLI  360
AVSEEGKHHP ERIVEHENDI ELKSMNSFGY KSDDSNVVNM PAPMGGMRRK HHRPWSLTEV  420
VKLVEGVARY GAGRWSEIKR LAFASYSYRT SVDLKDKWRN LLRASLTQLP AENGMQNSRK  480
HASIPIPAPI LLRVRELAET QAQVPPNISS SKFAGHSGGT DRNSQETRPG YL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027167787.1	0.0	uncharacterized protein LOC113767790 isoform X1
TrEMBL	A0A2R6PW01	1e-175	A0A2R6PW01_ACTCH; Telomere repeat-binding protein
STRING	PGSC0003DMT400006342	1e-164	(Solanum tuberosum)