![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_8255_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 601aa MW: 66286.3 Da PI: 7.0313 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.4 | 1.6e-08 | 531 | 579 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lv++v+++G g+W+ I r Rt ++k++w+++l cra_locus_8255_iso_5_len_3016_ver_3 531 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 579 8****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.092 | 524 | 583 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-13 | 526 | 584 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 528 | 581 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.49E-18 | 530 | 580 | No hit | No description |
SuperFamily | SSF46689 | 9.36E-16 | 530 | 588 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-6 | 531 | 579 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 601 aa Download sequence Send to blast |
METVVGVEGN DEAKADNLAS DAVSDLTFLN PVSDPVVYKL VRVDGDGRLV PATDDEVMVV 60 EDLLKDDKSE VHFAAKNQSI DTTKRSLPET AHSNCSGGQP GNLDVGATIL NIHGDPSMER 120 REAKRIRKPT KRYIEETSDV GSRESNGRLV SLVELGKRIA HQEESTRSEG MNTSQSQNLE 180 ACSSSQGRSI GIDASTSGGS ITKPDFSMLK GEICLDNLSI KDLQETFKAT FGRETSVKDK 240 QWLKRRIAMG LTNSCDFSTT TFIIEDNRVV KMFKGETSKS SAASEDLIAE AGNQTSGGLT 300 DVCDKEINVH SDSDAKRPES SLLECNSVGE DPNVEQRVAK RVRKPTKRYI EEISEGESRE 360 SSGRMITLVR SPESGQQSAK SVVRPFHHSQ QEGRPTVTRQ DSFGGSGVQV PFVSRVRRSR 420 PRENFMTLAK LQLDDIGTSA KVVKKAFEEP ARMAHDDAGN NVLKASLSPK WIGQPLIAVS 480 EEGKHHPERI VEHENDIELK SMNSFGYKSD DSNVVNMPAP MGGMRRKHHR PWSLTEVVKL 540 VEGVARYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLR ASLTQLPAEN GVSRLICTLH 600 V |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027167787.1 | 0.0 | uncharacterized protein LOC113767790 isoform X1 | ||||
TrEMBL | A0A2R6PW01 | 1e-167 | A0A2R6PW01_ACTCH; Telomere repeat-binding protein | ||||
STRING | VIT_09s0002g01480.t01 | 1e-163 | (Vitis vinifera) | ||||
STRING | PGSC0003DMT400006342 | 1e-163 | (Solanum tuberosum) |