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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8255_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 201aa MW: 22836.4 Da PI: 10.3399 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 83 | 131 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W+ E +lv++v+++G g+W+ I r Rt ++k++w+++l cra_locus_8255_iso_3_len_914_ver_3 83 PWSLTEVVKLVEGVARYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 131 8****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.092 | 76 | 135 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-14 | 78 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 80 | 133 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.42E-16 | 82 | 140 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.79E-19 | 82 | 132 | No hit | No description |
Pfam | PF00249 | 2.2E-7 | 83 | 131 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
XRLCSFTNFY YLVRQQNRSK SLYLSSXLIA VSEEGKHHPE RIVEHENDIE LKSMNSFGYK 60 SDDSNVVNMP APMGGMRRKH HRPWSLTEVV KLVEGVARYG AGRWSEIKRL AFASYSYRTS 120 VDLKDKWRNL LRASLTQLPA ENGMQNSRKH ASIPIPAPIL LRVRELAETQ AQVPPNISSS 180 KFAGHSGGTD RNSQETRPGY L |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027125614.1 | 4e-86 | uncharacterized protein LOC113742105 isoform X2 | ||||
TrEMBL | A0A068VKU6 | 1e-83 | A0A068VKU6_COFCA; Uncharacterized protein | ||||
STRING | XP_010261948.1 | 2e-68 | (Nelumbo nucifera) |