PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_8171_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 687aa    MW: 75898.3 Da    PI: 7.2909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_8171_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.2e-15474520455
                                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  cra_locus_8171_iso_5_len_2670_ver_3 474 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 520
                                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-20468537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044470519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.25E-17473524No hitNo description
Gene3DG3DSA:4.10.280.101.9E-20474528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-13474520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17476525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MNHHCVPDFD MDDDYSIPTT SSSSLNRSKK TPMGDEDIME LLWQDGQVVV QSQNQRSFKK  60
SPVGGSEGEI PTQQQSSAAG GTRDIRSVET DAMAHQQQQQ QQQLFMHEDE MASWLHYPID  120
DSSFDRDIYS DLLYPPLSTS ISSTTTTTAT IPGTNLPPRE IRTTTTEIRP LPPPPPSAPV  180
PPAPRPPVPL PPKCTAIETP AKIQNFMHFS RLPKTRIEPG PSSSSKAAKE LTVVESNDSP  240
RAEPESRVSQ AADSAVHVSG GNVGCGTVSV TAAAAGTSTA GREFATPCDL TVTSSPGGSG  300
DSFTASVEPH PIQKPTRSPP RTANAREENP TMPNVTVRQA IKLSFIGLDH KLVEALQTIS  360
TPIWLGPLVQ GKNFFFSPFP SSFSSLLKFR ILNPEEFCYH CKEVXWXEMA RLIDKLPIIS  420
CRTILSFLAL AMLICCVNTC LNLSSLQDIE IESTGGKKQP RGSTSTKRSR AAEVHNLSER  480
RRRDRINEKM RALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC GMIPMMYPGV  540
QQYIPAMGMG MDMGMNRPMM PYPALMPTSG MPIPPAANMG PIYPVPAYHM QPVPVPDPSR  600
LQAAGQSDPM LSSMIPNIPN QPRMPNYSDP YQQYMGLHQA QMPIPQVYYV PLFRYQPYSF  660
CQSGLILGDF YLYKYSRSRI PKFSIIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478483ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027163807.16e-96transcription factor PIF1
TrEMBLA0A0P0C6U21e-174A0A0P0C6U2_CATRO; Phytochrome interacting factor 1
STRINGSolyc09g063010.2.13e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341