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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_8127_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 537aa MW: 58603.8 Da PI: 9.7099 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H cra_locus_8127_iso_6_len_2577_ver_3 76 FICEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00077 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + cra_locus_8127_iso_6_len_2577_ver_3 152 WKCEKCSKKYAVQSDWKAHSKIC 174 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.31E-7 | 75 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 75 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.022 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.5E-5 | 76 | 98 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 117 | 147 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 140 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.31E-7 | 147 | 172 | No hit | No description |
SMART | SM00355 | 140 | 152 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MTXSSSIRGF IHHQDPNNII NPPPHHDPNP IPPPNNNPNP TSNPSAKRKR NLPGTPDPDA 60 EVIALSPKSL MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVRKKVYICP 120 EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK 180 CDCGTLFSRK DSFITHRAFC DALAEESARF TSVPTAPNLS FRNELFNGGI TNLHQGGNAQ 240 FSGVLRPENI GGLVDSLDGQ KPRLPMWLDN ANSQVLSPIG NSGNNSNNAA FLASSSSTSL 300 QELVQMSSQN QWLINNNRGQ DSSSSFPVGG ANVSSSSSGL QRVVLKEEEE NKANLSESLN 360 SMYYNETSAH MSATALLQKA AQMGSTRSNS SIFGTGFGLM SSSLSTQLGN FNSLSQNHHH 420 HHHENNLNGL MTSTPNSSST LTSSHHQGEG LLFGNMNSST SLMGNPPAPT MIPNNDQRNI 480 QSNKSIGNDQ AAAAGGEGSL TRDFLGVGRG SENRQPFLKF TSMGNNSNSA MNSFGSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-36 | 148 | 213 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 4e-36 | 148 | 213 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 114 | KLKQRTNKEVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108036.1 | 0.0 | zinc finger protein BALDIBIS-like isoform X2 | ||||
Swissprot | Q944L3 | 1e-123 | IDD9_ARATH; Zinc finger protein BALDIBIS | ||||
TrEMBL | A0A1S3XRQ4 | 0.0 | A0A1S3XRQ4_TOBAC; protein indeterminate-domain 9-like isoform X2 | ||||
TrEMBL | A0A1U7XIP2 | 0.0 | A0A1U7XIP2_NICSY; zinc finger protein JACKDAW-like | ||||
STRING | XP_009789501.1 | 0.0 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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