 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_8025_iso_3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
YABBY |
| Protein Properties |
Length: 210aa MW: 23673.9 Da PI: 8.713 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_8025_iso_3 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 206 | 1.4e-63 | 6 | 181 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntila...........vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes 66
+ sseq+Cy+ CnfCn +la vsvP +slf +vtvrCGhCt+l svn+a a q l+++s
cra_locus_8025_iso_3_len_1081_ver_3 6 DVSSEQLCYIPCNFCNIVLAiwyfvggyvtqVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSSSSS--SC 77
5789*************997555555555558********************************999997..45 PP
YABBY 67 lkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqri 140
++++ + + + + ++e+ +s+s+ ++++ + +++ ++++ v+rPPekrqrvPsayn+fikeeiqri
cra_locus_8025_iso_3_len_1081_ver_3 78 SWQDVQGAANCNPPHHQYKMEMGSSSSRCNNKMAMRSSNIPKTTEERIVNRPPEKRQRVPSAYNQFIKEEIQRI 151
5556666666666666666666555555555555655555555556789************************* PP
YABBY 141 kasnPdishreafsaaaknWahfPkihfgl 170
ka+nPdishreafs+aaknWahfP+ihfgl
cra_locus_8025_iso_3_len_1081_ver_3 152 KANNPDISHREAFSTAAKNWAHFPHIHFGL 181
****************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis |
| GO:1902183 | Biological Process | regulation of shoot apical meristem development |
| GO:2000024 | Biological Process | regulation of leaf development |
| Sequence ? help Back to Top |
| Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MSSCIDVSSE QLCYIPCNFC NIVLAIWYFV GGYVTQVSVP CSSLFDIVTV RCGHCTNLWS 60
VNMAAAFQSL SSSSSSCSWQ DVQGAANCNP PHHQYKMEMG SSSSRCNNKM AMRSSNIPKT 120
TEERIVNRPP EKRQRVPSAY NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG 180
LMLETNNQPK LGHDQGSEKH RMPRAAFLKK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
