![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_7992_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 292aa MW: 31815.3 Da PI: 7.4998 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.9 | 1.4e-40 | 37 | 98 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss cra_locus_7992_iso_3_len_1424_ver_3 37 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 98 6899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-29 | 25 | 95 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.4E-34 | 39 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.646 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MDPSSAQHHH QEMSSQTLES MLVCTKAQQD QKKPRPPEQA LKCPRCDSTN TKFCYYNNYS 60 LSQPRYFCKS CRRYWTKGGT LRNVPVGGGC RKNKRSSSSS SSSSSKRGQD QAVATNHINP 120 ILGGLSYDSD ISLAIARLQK QTNGQMGFDD NDHLPMLGNP NNPHCDVLGS APAPTGLFDA 180 LRGGFLEPPN GFHHSLFYNG MNNIGHVENG GGLGSMNVSD QEMGGLPYEE LGVSSATTVT 240 TTVKQEMCNS RSEGENRVLW GFPWQFNGEA NIGSDLGFGS SSWHGLLNSP LM |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108486.1 | 1e-134 | dof zinc finger protein DOF2.1-like | ||||
Refseq | XP_027150703.1 | 1e-134 | dof zinc finger protein DOF2.1-like | ||||
TrEMBL | A0A068UK67 | 1e-130 | A0A068UK67_COFCA; Uncharacterized protein | ||||
STRING | XP_009622795.1 | 1e-111 | (Nicotiana tomentosiformis) |