PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7992_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family Dof
Protein Properties Length: 292aa    MW: 31815.3 Da    PI: 7.4998
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7992_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof128.91.4e-403798263
                               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                                         +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss
  cra_locus_7992_iso_3_len_1424_ver_3 37 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 98
                                         6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-292595IPR003851Zinc finger, Dof-type
PfamPF027013.4E-343995IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.6464195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDPSSAQHHH QEMSSQTLES MLVCTKAQQD QKKPRPPEQA LKCPRCDSTN TKFCYYNNYS  60
LSQPRYFCKS CRRYWTKGGT LRNVPVGGGC RKNKRSSSSS SSSSSKRGQD QAVATNHINP  120
ILGGLSYDSD ISLAIARLQK QTNGQMGFDD NDHLPMLGNP NNPHCDVLGS APAPTGLFDA  180
LRGGFLEPPN GFHHSLFYNG MNNIGHVENG GGLGSMNVSD QEMGGLPYEE LGVSSATTVT  240
TTVKQEMCNS RSEGENRVLW GFPWQFNGEA NIGSDLGFGS SSWHGLLNSP LM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108486.11e-134dof zinc finger protein DOF2.1-like
RefseqXP_027150703.11e-134dof zinc finger protein DOF2.1-like
TrEMBLA0A068UK671e-130A0A068UK67_COFCA; Uncharacterized protein
STRINGXP_009622795.11e-111(Nicotiana tomentosiformis)