PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_78855_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

LBD

Protein Properties

Length: 201aa MW: 21975.9 Da PI: 5.1705

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_78855_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.3	1.1e-42	37	136	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvy cra_locus_78855_iso_1_len_659_ver_3 37 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVY 110 7*********************************************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallkee 100 G++g i +lq+q+++l+a+la+ ++e cra_locus_78855_iso_1_len_659_ver_3 111 GCAGAICQLQKQVNELQAQLAKSQAE 136 *******************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.379	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-42	37	134	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MESSDTTTIT SPSSSSVSPS SSSSPPPPPP PSVVVSPCAA CKILRRRCAE KCVLAPYFPP 60 NDPIKFTTAH RVFGASNIIK FLQELPESQR ADAVSSMVYE ANARLRDPVY GCAGAICQLQ 120 KQVNELQAQL AKSQAELLNM QCQQANLMAL ICMEMSSDPQ PQPQQQQSPT DNFINHGLIQ 180 TTNLNFFDDN HPGALWEPLW T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-43	36	144	10	118	LOB family transfactor Ramosa2.1
5ly0_B	1e-43	36	144	10	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009610820.1	1e-96	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016509518.1	1e-96	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-73	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	6e-73	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1S4D850	3e-95	A0A1S4D850_TOBAC; LOB domain-containing protein 1-like
STRING	XP_009610820.1	5e-96	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669