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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7877_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GATA | ||||||||
Protein Properties | Length: 306aa MW: 34294.9 Da PI: 9.4538 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.4 | 4.7e-19 | 160 | 193 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp g+k+LCnaCG+++rk + cra_locus_7877_iso_6_len_1359_ver_3 160 CTDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 193 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.14E-12 | 154 | 194 | No hit | No description |
PROSITE profile | PS50114 | 12.651 | 154 | 190 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 6.2E-20 | 154 | 205 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-15 | 158 | 193 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.20E-12 | 159 | 191 | No hit | No description |
Pfam | PF00320 | 1.0E-16 | 160 | 193 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 160 | 185 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
SFYSSSCFLR LIYYSSSSAR SNPILYYYYY YYYSXXXXXX XXXPPHHQDH QDENQAGSYD 60 DDLQGKEGGN KRLKLTLWKN NNEKQENNIP AAKWMSSKMR IMHKMKNSTT TGHNNNKVED 120 HHHHQQQKQG SYNSTTSFEG DHNLSSCSYN NNSNPPVRVC TDCNTTKTPL WRSGPKGPKS 180 LCNACGIRQR KARRAMAAAA AAATAGGTSQ VNYETATTSS TLKMKEKKNN GGRGSGVHLK 240 KGCKMTSAAE SSSSADDHNE EEKKKNVFED FLLNLSKNLA FHRVFPQDEK EAAILLMALS 300 CGLVHG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011078200.2 | 2e-63 | LOW QUALITY PROTEIN: putative GATA transcription factor 22 | ||||
TrEMBL | A0A068U3P2 | 2e-58 | A0A068U3P2_COFCA; Uncharacterized protein | ||||
STRING | XP_010262144.1 | 2e-50 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 |