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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_78154_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 125aa MW: 14164 Da PI: 10.392 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 70.5 | 2.5e-22 | 11 | 59 | 5 | 54 |
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 +Wt++LHe+F+ av+qL G+ + Pk ile+m+v+gLt+ +v+SHLQk R cra_locus_78154_iso_1_len_375_ver_3 11 EWTSDLHEKFMAAVAQL-GEGRCYPKDILEIMNVPGLTRMQVASHLQKCR 59 7****************.9*****************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.727 | 1 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.27E-16 | 6 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 8 | 60 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-19 | 11 | 60 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-7 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
AGQVKRKICT EWTSDLHEKF MAAVAQLGEG RCYPKDILEI MNVPGLTRMQ VASHLQKCRN 60 DNWRVPERKN KGNGGEGSSS TKKDHVRRFG TMPKSFMNYQ QEKNQEKSSE KNPIPAAETA 120 NGRRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019176860.1 | 1e-37 | PREDICTED: two-component response regulator ORR26-like | ||||
TrEMBL | A0A1U7Y299 | 3e-35 | A0A1U7Y299_NICSY; two-component response regulator ARR2-like | ||||
TrEMBL | S8D9N5 | 3e-35 | S8D9N5_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009798262.1 | 6e-36 | (Nicotiana sylvestris) | ||||
STRING | XP_009595757.1 | 3e-38 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA813 | 23 | 84 |