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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7801_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 768aa MW: 86572.1 Da PI: 8.7929 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 662 | 684 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H cra_locus_7801_iso_1_len_2510_ver_3 662 CPvkGCGKDFISHKYLVQHRRVH 684 9999*****************99 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 720 | 746 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H cra_locus_7801_iso_1_len_2510_ver_3 720 YVCTeaGCGQTFRFVSDFSRHKRKtgH 746 99********************99666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 24 | 637 | 659 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.0096 | 660 | 684 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.3 | 660 | 689 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.5E-6 | 661 | 683 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 662 | 684 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.12E-9 | 676 | 718 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-9 | 684 | 712 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0014 | 690 | 714 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 690 | 719 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 692 | 714 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.5E-8 | 708 | 743 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-9 | 713 | 743 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.676 | 720 | 751 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 720 | 746 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 722 | 746 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0040010 | Biological Process | positive regulation of growth rate | ||||
GO:0045815 | Biological Process | positive regulation of gene expression, epigenetic | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0071558 | Molecular Function | histone demethylase activity (H3-K27 specific) |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
XPKSVSRQGQ MHKRNPDGLF DVLVQSAEQI QLTDDESAEV VSKEDTRKEH SSLGLLALAY 60 GNSSDSEEDE AEADVHPGSW ETKNSDCLSC SVLVGDAAGS AGPEAASYFD FSNSAMDCAN 120 EIPLQSARPS MEQEPTRNRS EGRSQQSLDW PALPEENSFS YIESDSFGHQ LKLQHGSSSC 180 MPLAQKAETK MTNGLLPFDN RTLPFSARSD EESSRMHVFC LQHAVQVEKQ LRSIGGARVL 240 LLCHPDYPEL EAQARKLAEE LGNDHIWSDV SFREASGEDE EMIRLALESE EAIHGNGDWA 300 VKLGINLYYS ANLSRSPLYS KQMPYNFIIY NAFGRSPTMA EFNGKGPIKL KKTVVAGKWC 360 GKVWMSNQVH PFLAERDHGE EKTRSSSHVK VTLKPERPSE NIQTIETASR ISISCRKRKS 420 RTEIRPGTKE NSLKAEEQEK ASEDMSMECF LRQCKSNLRN KRMKKEKPEP LIKSARNKNE 480 LKIEIEDERK PRNKGVKNKK DFNMEIEDEP VPRPKCGKNK KELNIENEGE QKPSNKGVRS 540 KRELKEDEDD DPKPPRTRCA REKKQINLDT IDDPDGGPST RLRKRPSKPG KGQVARSVEA 600 KPTLKKQQNS VQQNNGKPKK GIVGSKNSRT REEKADFPCD LEGCTMSFGS KQELSLHKRN 660 ICPVKGCGKD FISHKYLVQH RRVHLDDRPL KCPWKGCKMT FKWAWARTEH IRVHTGARPY 720 VCTEAGCGQT FRFVSDFSRH KRKTGHTSKK GRGXLVIVID GVVFNIAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 1e-66 | 635 | 750 | 21 | 136 | Lysine-specific demethylase REF6 |
6a58_A | 1e-66 | 635 | 750 | 21 | 136 | Lysine-specific demethylase REF6 |
6a59_A | 1e-66 | 635 | 750 | 21 | 136 | Lysine-specific demethylase REF6 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022882747.1 | 0.0 | lysine-specific demethylase REF6-like isoform X3 | ||||
TrEMBL | A0A1U8FXA8 | 0.0 | A0A1U8FXA8_CAPAN; Lysine-specific demethylase REF6 | ||||
TrEMBL | A0A2G2ZW03 | 0.0 | A0A2G2ZW03_CAPAN; lysine-specific demethylase REF6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4988 | 23 | 31 |