PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7687_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 467aa    MW: 53023.4 Da    PI: 8.3516
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7687_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-055981123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                         + C+ C+k F r  nL+ H r H
  cra_locus_7687_iso_3_len_1766_ver_3 59 FICEVCNKGFQRDQNLQLHRRGH 81
                                         89*******************88 PP
2zf-C2H213.50.00021138160123
                                          EEETTTTEEESSHHHHHHHHHHT CS
                              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                          +kC++C+k++  +s+ k H +t+
  cra_locus_7687_iso_3_len_1766_ver_3 138 WKCEKCSKRYAVQSDWKAHSKTC 160
                                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-65881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.22E-65881No hitNo description
PfamPF121716.6E-55981IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0265981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8665981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.22E-6133158No hitNo description
SMARTSM00355130138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSNLTSASND QGISISSSGN RDEQSQPSIK RKRNLPGNPD PEAEVIALSP GALLATNRFI  60
CEVCNKGFQR DQNLQLHRRG HNLPWKLKKR SNQEGIIIRK KVYVCPEVTC VHHHPSRALG  120
DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TIFSRRDSFI  180
THRAFCDALP EENSIRGAFS TNHDQFQYQI HMSSHNLSSP SSLLFPQLKT EQLDLPQETF  240
FNSSRPQTII MPEQHRQSYS YNPNNNHPII SSSFQPDMSA TALLQKAAQM AIAVTKMPPP  300
SHHHDHQPET TSILRPHQVH MITETAAAGS GSLQGLYPRE ENNMGEYGFI HDDLASMSSS  360
FGTHKSIVTP NCMELHDVII SATHHHHRQT SPFSSNKNFE ERVLDDEKRP NINKLECGNE  420
GGLTRDFLSL RALIPNTSRD QCDLFMPDLQ HQIGNSSYEH HHKYHQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34134203372Zinc finger protein JACKDAW
5b3h_F2e-34134203372Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262086.11e-126PREDICTED: protein indeterminate-domain 7 isoform X2
TrEMBLA0A1U8AIU91e-124A0A1U8AIU9_NELNU; protein indeterminate-domain 7 isoform X2
STRINGPOPTR_0006s24410.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350