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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7687_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 454aa MW: 51492.9 Da PI: 8.4507 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.6e-05 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H cra_locus_7687_iso_2_len_1839_ver_3 59 FICEVCNKGFQRDQNLQLHRRGH 81 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 138 | 160 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ cra_locus_7687_iso_2_len_1839_ver_3 138 WKCEKCSKRYAVQSDWKAHSKTC 160 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.98E-6 | 58 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.5E-6 | 58 | 81 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 6.4E-5 | 59 | 81 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.026 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.866 | 59 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 126 | 159 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.98E-6 | 133 | 158 | No hit | No description |
SMART | SM00355 | 130 | 138 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MSNLTSASND QGISISSSGN RDEQSQPSIK RKRNLPGNPD PEAEVIALSP GALLATNRFI 60 CEVCNKGFQR DQNLQLHRRG HNLPWKLKKR SNQEGIIIRK KVYVCPEVTC VHHHPSRALG 120 DLTGIKKHFC RKHGEKKWKC EKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TIFSRRDSFI 180 THRAFCDALP EENSIRGAFS TNHDQFQYQI HMSSHNLSSP SSLLFPQLKT EQLDLPQETF 240 FNSSRPQTII MPEQHRQSYS YNPNNNHPII SSSFQPDMSA TALLQKAAQM AIAVTKMPPP 300 SHHHDHQPET TSILRPHQVH MITETAAAGS GSLQGLYPRE ENNMGEYGFI HDDLASMSSS 360 FGTHKSIVTP NCMELHDVII SATHHHHRQT SPFSSNKNFE ERVLDDEKRP NINKLECGNE 420 GGLTRDFLSL RALIPNTSRD QCDLFMPDLQ HQKF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 134 | 203 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 134 | 203 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010262086.1 | 1e-125 | PREDICTED: protein indeterminate-domain 7 isoform X2 | ||||
TrEMBL | A0A1U8AIU9 | 1e-124 | A0A1U8AIU9_NELNU; protein indeterminate-domain 7 isoform X2 | ||||
STRING | POPTR_0006s24410.1 | 1e-123 | (Populus trichocarpa) |