PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7643_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C2H2
Protein Properties Length: 235aa    MW: 26515.2 Da    PI: 9.4381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7643_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-0592111120
                                         EEETTTTEEESSHHHHHHHH CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                         ++Cp C k+F+r  n++ H+
  cra_locus_7643_iso_2_len_927_ver_3  92 FSCPLCFKTFNRYNNMQMHM 111
                                         89*****************9 PP
2zf-C2H215.35.9e-05176198123
                                         EEETTTTEEESSHHHHHHHHHHT CS
                             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                         + C +Cgk F  + + ++H +++
  cra_locus_7643_iso_2_len_927_ver_3 176 FMCRKCGKAFAVRGDWRTHEKNC 198
                                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.6192114IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.02E-892114No hitNo description
PROSITE profilePS501579.6692119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-592111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576679.02E-8171196No hitNo description
Gene3DG3DSA:3.30.160.605.6E-6172196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808176196IPR007087Zinc finger, C2H2
SMARTSM0035549176196IPR015880Zinc finger, C2H2-like
SMARTSM00355150202225IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MMIINKNRPF AAAKEGGEAE SVTVALHIGL PNPSAADLAA SSSSTTSTNK DEEEDQEEEV  60
EEGINTGYNM RVKKGQYWIP TPSQILIGPT QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK  120
GPESLRGTQP TGMLRLPCYC CAPGCRNNID HPRSKPLKDF RTLQTHYKRK HGIKPFMCRK  180
CGKAFAVRGD WRTHEKNCGK LWYCICGSDF KHKRSLKDHI KAFGHGHGPY ATTTT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792207.11e-133PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ9SVY11e-124ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1U7XJH11e-132A0A1U7XJH1_NICSY; protein TRANSPARENT TESTA 1-like
STRINGXP_009792207.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]