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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7643_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 235aa MW: 26515.2 Da PI: 9.4381 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 4.9e-05 | 92 | 111 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ cra_locus_7643_iso_2_len_927_ver_3 92 FSCPLCFKTFNRYNNMQMHM 111 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.3 | 5.9e-05 | 176 | 198 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ cra_locus_7643_iso_2_len_927_ver_3 176 FMCRKCGKAFAVRGDWRTHEKNC 198 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.61 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.02E-8 | 92 | 114 | No hit | No description |
PROSITE profile | PS50157 | 9.66 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 92 | 111 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.02E-8 | 171 | 196 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-6 | 172 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.808 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 49 | 176 | 196 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 150 | 202 | 225 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009860 | Biological Process | pollen tube growth | ||||
GO:0010500 | Biological Process | transmitting tissue development | ||||
GO:1990058 | Biological Process | fruit replum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MMIINKNRPF AAAKEGGEAE SVTVALHIGL PNPSAADLAA SSSSTTSTNK DEEEDQEEEV 60 EEGINTGYNM RVKKGQYWIP TPSQILIGPT QFSCPLCFKT FNRYNNMQMH MWGHGSQYRK 120 GPESLRGTQP TGMLRLPCYC CAPGCRNNID HPRSKPLKDF RTLQTHYKRK HGIKPFMCRK 180 CGKAFAVRGD WRTHEKNCGK LWYCICGSDF KHKRSLKDHI KAFGHGHGPY ATTTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792207.1 | 1e-133 | PREDICTED: protein TRANSPARENT TESTA 1-like | ||||
Swissprot | Q9SVY1 | 1e-124 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A1U7XJH1 | 1e-132 | A0A1U7XJH1_NICSY; protein TRANSPARENT TESTA 1-like | ||||
STRING | XP_009792207.1 | 1e-132 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA462 | 24 | 133 |
Publications ? help Back to Top | |||
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