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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_763_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 271aa MW: 29130.3 Da PI: 8.8478 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H cra_locus_763_iso_4_len_1120_ver_3 84 FSCNYCQRKFYSSQALGGHQNAH 106 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.9E-6 | 82 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MKEAAGKEPS EESNSSIDNS MEENPTQENT KDSHVVHHVL EGNFKKPDEL NLIDSLHDQK 60 NSSSSSILLE QQPSSDDQQP ARVFSCNYCQ RKFYSSQALG GHQNAHKRER TIAKRGQRIG 120 ANNNATATSS SFGPFSSTMA SLPLHGTFNR SLGIQAHSMI HKPSSNCFNN VGLLPTMFGH 180 HHGGGGGGAW SRKPLDQQPA IGRLAPENYH MGSSLLGTSS SGGGGGGAKA ARFDSFTKFS 240 SPAVVAMADG FKPPLRTNQD ELKKLDLTLK L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272545.1 | 5e-64 | PREDICTED: zinc finger protein 1 | ||||
Swissprot | Q39262 | 4e-38 | ZFP3_ARATH; Zinc finger protein 3 | ||||
TrEMBL | A0A438DJP6 | 6e-63 | A0A438DJP6_VITVI; Zinc finger protein 1 | ||||
TrEMBL | A5BQW1 | 6e-63 | A5BQW1_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g09080.t01 | 2e-63 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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