PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_763_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 21794.5 Da PI: 10.647 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00015 | 17 | 39 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H cra_locus_763_iso_3_len_762_ver_3 17 FSCNYCQRKFYSSQALGGHQNAH 39 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.29E-6 | 15 | 44 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 17 | 44 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
HVVHHVLEDD QQPARVFSCN YCQRKFYSSQ ALGGHQNAHK RERTIAKRGQ RIGANNNATA 60 TSSSFGPFSS TMASLPLHGT FNRSLGIQAH SMIHKPSSNC FNNVGLLPTM FGHHHGGGGG 120 GAWSRKPLDQ QPAIGRLAPE NYHMGSSLLG TSSSGGGGGG AKAARFDSFT KFSSPAVVAM 180 ADGFKPPLRT NQDELKKLDL TLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002272545.1 | 9e-62 | PREDICTED: zinc finger protein 1 | ||||
TrEMBL | A5BQW1 | 1e-60 | A5BQW1_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g09080.t01 | 3e-61 | (Vitis vinifera) |