PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_763_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 246aa MW: 26799.8 Da PI: 8.1639

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_763_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H cra_locus_763_iso_1_len_1045_ver_3 99 FSCNYCQRKFYSSQALGGHQNAH 121 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.73E-6	97	126	No hit	No description
PROSITE profile	PS50157	11.427	99	126	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	101	121	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MKEAAGKEPS EESNSSIDNS MEENPTQENT KNTPDHLALD LTLSSKDSHV VHHVLEGNFK 60 KPDELNLIDS LHDQKNSSSS SILLEQQPSS DDQQPARVFS CNYCQRKFYS SQALGGHQNA 120 HKRERTIAKR GQRIGANNNA TATSSSFGPF SSTMASLPLH GTFNRSLGIQ AHSMIHKPSS 180 NCFNNVGLLP TMFGHHHGGG GGAKAARFDS FTKFSSPAVV AMADGFKPPL RTNQDELKKL 240 DLTLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002272545.1	3e-51	PREDICTED: zinc finger protein 1
TrEMBL	A5BQW1	2e-50	A5BQW1_VITVI; Uncharacterized protein
STRING	VIT_09s0002g09080.t01	1e-50	(Vitis vinifera)