 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_762_iso_9 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 247aa MW: 28457.7 Da PI: 9.7984 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_762_iso_9 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 96.7 | 1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
cra_locus_762_iso_9_len_1126_ver_3 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLFEYAT 59
79***********************************************86 PP
|
| 2 | K-box | 106.8 | 2.5e-35 | 86 | 174 | 12 | 100 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86
+++ s++ e+akLk++ie Lqr+qRh++GedLe+Lsl+eLq+Le+qL+ +lk+iRskKn+l++e+i+elqkk k+
cra_locus_762_iso_9_len_1126_ver_3 86 ETQGSWSLEHAKLKARIEVLQRNQRHYMGEDLENLSLRELQNLEHQLDVALKHIRSKKNQLMFESISELQKKDKA 160
56789********************************************************************** PP
K-box 87 lqeenkaLrkklee 100
lqe+n+ L kk++e
cra_locus_762_iso_9_len_1126_ver_3 161 LQEQNNILAKKVKE 174
***********986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.32E-36 | 2 | 61 | No hit | No description |
| SuperFamily | SSF55455 | 3.53E-29 | 2 | 64 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.1E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.1E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.1E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.3E-28 | 87 | 172 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 17.311 | 88 | 178 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSN KGKLFEYATD 60
SAWRGSSNDM KGTLMQKDKW GXTDIETQGS WSLEHAKLKA RIEVLQRNQR HYMGEDLENL 120
SLRELQNLEH QLDVALKHIR SKKNQLMFES ISELQKKDKA LQEQNNILAK KVKEKEKALA 180
QQSEEEQQQN HELNSSSFLL SQPLNSLNIS EAYQRGGENE GEQQGTSRHL QNSGAMPPWM 240
LSHINXW
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
