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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7610_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 61aa MW: 6747.72 Da PI: 4.8191 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.8 | 3.9e-11 | 16 | 51 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 +g+WT eEd++l+++++ +G g W++ ar g +++l cra_locus_7610_iso_4_len_1164_ver_3 16 KGPWTMEEDLILINYIANHGEGVWNSLARSAG-TLSL 51 79******************************.9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-12 | 8 | 45 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.64E-8 | 8 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.039 | 11 | 44 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 7.8E-9 | 16 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-5 | 18 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MDKKPGNNSQ DVEVRKGPWT MEEDLILINY IANHGEGVWN SLARSAGTLS LIICSSTIIF 60 I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022023239.1 | 8e-25 | myb-related protein 305-like | ||||
Swissprot | P81391 | 3e-24 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A251RP86 | 2e-23 | A0A251RP86_HELAN; Putative myb protein | ||||
TrEMBL | A0A2G9GAJ3 | 2e-23 | A0A2G9GAJ3_9LAMI; Uncharacterized protein | ||||
STRING | XP_004489258.1 | 2e-22 | (Cicer arietinum) |
Publications ? help Back to Top | |||
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