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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_759_iso_1 | ||||||||
Common Name | bpf-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 265aa MW: 29280 Da PI: 7.1193 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.7e-07 | 161 | 210 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+ lG+g+W+ + + +Rt ++k++w ++ cra_locus_759_iso_1_len_1372_ver_3 161 RRPFSVAEVEALVEAVEILGTGRWRDVKMRAFdnaDHRTYVDLKDKWKTL 210 678999********************9766668**9***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-10 | 153 | 212 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.432 | 156 | 215 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-7 | 160 | 213 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-16 | 162 | 243 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 2.92E-18 | 162 | 212 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000781 | Cellular Component | chromosome, telomeric region | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
METVTAILGG GLRVGVVLQG KKVRDDNRTL QQAGILQSGN LDNLGFMLEP TLTQVPESPK 60 DSPHKLHCET DQNLCRSPAS PVLGSGLSND AFDSPSKMEQ LHESNHVAIH SPRTNTDTVT 120 DGEVPDSRAL VTLPAVSAEA LAMVPVNQKP KRCESSQRRT RRPFSVAEVE ALVEAVEILG 180 TGRWRDVKMR AFDNADHRTY VDLKDKWKTL VHTASISPQQ RRGEPVPQEL LDRVLSAHAY 240 WSQHQSKQTG KHHVEPLKIM DAQAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 5e-70 | 145 | 264 | 1 | 116 | Telomere binding protein TBP1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences 5'-TTTAGGG-3'. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:11513850, ECO:0000269|PubMed:17272298}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress. {ECO:0000269|PubMed:12909688}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110975.1 | 1e-123 | telomere repeat-binding protein 2-like | ||||
Refseq | XP_027110976.1 | 1e-123 | telomere repeat-binding protein 2-like | ||||
Swissprot | Q9FFY9 | 1e-90 | TRP4_ARATH; Telomere repeat-binding protein 4 | ||||
TrEMBL | Q9FNS1 | 0.0 | Q9FNS1_CATRO; MYB-like DNA-binding protein | ||||
STRING | XP_009615640.1 | 1e-119 | (Nicotiana tomentosiformis) |