PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_7589_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C3H

Protein Properties

Length: 497aa MW: 53897.1 Da PI: 7.6985

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7589_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.1	4.7e-11	50	73	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + elCr+f r G C+yG+rCkF H+ cra_locus_7589_iso_4_len_1933_ver_3 50 RKELCRNFTR-GSCQYGERCKFLHV 73 789*****.***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	17.206	48	75	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-6	49	74	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	49	74	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-8	50	73	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-8	52	72	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
GCVNDMNNLK FLPKLVKTEH SKVSHSILLS GKKFLLPIPE QCGDQIMPPR KELCRNFTRG 60 SCQYGERCKF LHVSPQPSKL NPFGFGTQTG NQLPHTNLQA QKTNPFGFGV QNHSQSRGAS 120 EFGAKQNQFK PFENKWTRFS PVNASNSSAS RQPDNQSVAP SHKCTDPESC KRQIVEDFEQ 180 ERPLWKLTCY GHSKNGPCDI VGDLSYEELR AAAYDDAKRG LNLQSIVEKE RNLLNSKLLE 240 FENLVRNPFK SQPNSALNPQ NPLQSGIQNA PVISTSSNPP AFSSFSQFGA SVNSGAAAAA 300 APNSLFGQSN PFQNNSQTSS TFQTNSSSSG ALGGIMKSFF ISENEXQGIE YCRXLINVLG 360 SFGSQFPHQL FGSHSSSFGS NSVSVQKNPF PTSATSLQIS ASAGDNSGPS SLPNGIGSSM 420 NMNNLRTHTA TESKGGDDSI WMKEEWSIGE IPEEAPPEDI ADNCXYYLAA RAEFGGAGIY 480 HLSGRKPGDL SSALFGV

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

GCVNDMNNLK FLPKLVKTEH SKVSHSILLS GKKFLLPIPE QCGDQIMPPR KELCRNFTRG  60
SCQYGERCKF LHVSPQPSKL NPFGFGTQTG NQLPHTNLQA QKTNPFGFGV QNHSQSRGAS  120
EFGAKQNQFK PFENKWTRFS PVNASNSSAS RQPDNQSVAP SHKCTDPESC KRQIVEDFEQ  180
ERPLWKLTCY GHSKNGPCDI VGDLSYEELR AAAYDDAKRG LNLQSIVEKE RNLLNSKLLE  240
FENLVRNPFK SQPNSALNPQ NPLQSGIQNA PVISTSSNPP AFSSFSQFGA SVNSGAAAAA  300
APNSLFGQSN PFQNNSQTSS TFQTNSSSSG ALGGIMKSFF ISENEXQGIE YCRXLINVLG  360
SFGSQFPHQL FGSHSSSFGS NSVSVQKNPF PTSATSLQIS ASAGDNSGPS SLPNGIGSSM  420
NMNNLRTHTA TESKGGDDSI WMKEEWSIGE IPEEAPPEDI ADNCXYYLAA RAEFGGAGIY  480
HLSGRKPGDL SSALFGV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027175684.1	1e-140	zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBL	A0A068V326	1e-139	A0A068V326_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400007502	1e-116	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9439	20	22