PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_75236_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 104aa MW: 11843 Da PI: 9.5474

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_75236_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.2	1.9e-22	1	73	14	86
trihelix 14 rremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 r+e+++ ++++k++k+lWe +s kmre+gf rsp++C++kw+nl k++kk k+++++++ ++s ++ y++++e cra_locus_75236_iso_1_len_310_ver_3 1 RKEIDSLFNTSKSNKHLWENISLKMREQGFDRSPTMCTDKWRNLLKEFKKAKTNNQDGNGNVSAKMGYYKEIE 73 688999*****************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.16E-18	1	52	No hit	No description
Pfam	PF13837	6.1E-15	6	75	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
RKEIDSLFNT SKSNKHLWEN ISLKMREQGF DRSPTMCTDK WRNLLKEFKK AKTNNQDGNG 60 NVSAKMGYYK EIEEILKERS KDGPGGGGAD EGVSKVDSFM QFAX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-32	1	71	19	86	DNA binding protein GT-1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071308.1	5e-53	trihelix transcription factor GT-4-like
Swissprot	Q9FX53	6e-38	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A2G9I9G9	2e-49	A0A2G9I9G9_9LAMI; Transcription factor GT-2
STRING	Migut.E00236.1.p	4e-45	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]