PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

cra_locus_751_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bHLH

Protein Properties

Length: 286aa MW: 31661.8 Da PI: 7.0123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_751_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.6	2.6e-14	102	148	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L cra_locus_751_iso_3_len_1177_ver_3 102 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 148 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.136	99	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-11	102	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-15	103	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-15	103	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-13	105	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.91E-5	112	151	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.4E-4	185	253	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MFPEVSPILP WTLPPVHHHH HQEPFFHHPA TSYGGFFNRR PPVPGLQFGY DGSSSDHHLR 60 LISDTALGQV VQSGSAPFGL QAELQKMTAQ EIMDAKALAA SKSHSEAERR RRERINNHLA 120 KLRSLLPNTT KTDKASLLAE VIQHVKELKR QTSLIAESSP VPTEIDELSV DNASDEDGKF 180 IIKASLCCED RSDLLPDLIK TLKALRLKTL KAEITTLGGR VRNVLFITSE DDDVVLDQQQ 240 QYSITSIQEA LKSVMEKAAG GGDDSASAAS VKRQRTNINI LEHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	112	ERRRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077316.1	1e-143	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-104	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A2G9I1N8	1e-144	A0A2G9I1N8_9LAMI; Uncharacterized protein
STRING	Gorai.008G186700.1	1e-136	(Gossypium raimondii)
STRING	cassava4.1_010668m	1e-136	(Manihot esculenta)

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]