PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7495_iso_7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 784aa    MW: 86873 Da    PI: 4.6726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7495_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06297315625
                                          -SGGGGTS--TTTTT-SS-S CS
                              zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                                          C+ff++ G+C  G++C+F H
  cra_locus_7495_iso_7_len_3332_ver_3 297 CDFFSK-GWCIKGSSCRFVH 315
                                          ******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.601291318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4291318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6293316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
RPGALAKSAS LSAEARYFLS TSQRSAPPFY LSLLCSPLDG LQTVPTLSKY RIVRCYILFP  60
DLQCPHPPEA ADPPPKESDL ESVTEPDIGD DDEYDIEYEE VEEEIEVEEE IEVEEEIEVE  120
EEIEEEDQDG ESEIAETLAP ANLNYENDIT EAIEPRCPGE QISSASATIG TSVALCGTTI  180
GDYSGICRIA CLDTKRQEDK SQVGGDKDAK SRNGGASLFD KGERSSENTH LFGGETDAPA  240
INVDASSRKA NGDLHCKKER NQTAGEDSKQ GSSRVSPRSL SSSTEFSDGS KQQPMVCDFF  300
SKGWCIKGSS CRFVHKRDHM TVSSQYVEGH LNAAEEKTKL VNGKASSIPH ISLEKDDEML  360
GEKSEMKHPL EKNSLRRELS NEDYCHYSSP MAKDSSQNWM ISGSNLTASE NYRNMTNFLN  420
IVPRKINQFM PCDHDSSMPN SSSYKLPLSS SFYSWNPDPA DPEKLLDSNQ NYCGSKLSSL  480
KRGSSSFSTY NLENLSHSDV LNDTQQPVGC KRKISFDWEP SAPFQPSFFI TQRLLASRSL  540
YDPVRDSIEQ TSSSGDGPPK SSYSGLGTSV LGAKLHLDGD LVPKRMLGSE CSFSKCSHSD  600
LSFHANAPIK TFPAKDSSDM DIDAMESPGG QCKNRSLLKE EKLNSDHARD CEEVDEKRRD  660
HDSELQKDGS GNKNEVKEER SGQNAESILD LKADGCTQNS RTLKYFHAAL VEFVKELLKP  720
TWHEGVISKD AYKMIVKKTI GKVLDTLEPH QIPSTSESIK QYLSVSETKL AKLIEAYVDK  780
YRNS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30042122