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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7495_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C3H | ||||||||
Protein Properties | Length: 784aa MW: 86873 Da PI: 4.6726 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 297 | 315 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+ff++ G+C G++C+F H cra_locus_7495_iso_7_len_3332_ver_3 297 CDFFSK-GWCIKGSSCRFVH 315 ******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.601 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-4 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 293 | 316 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 784 aa Download sequence Send to blast |
RPGALAKSAS LSAEARYFLS TSQRSAPPFY LSLLCSPLDG LQTVPTLSKY RIVRCYILFP 60 DLQCPHPPEA ADPPPKESDL ESVTEPDIGD DDEYDIEYEE VEEEIEVEEE IEVEEEIEVE 120 EEIEEEDQDG ESEIAETLAP ANLNYENDIT EAIEPRCPGE QISSASATIG TSVALCGTTI 180 GDYSGICRIA CLDTKRQEDK SQVGGDKDAK SRNGGASLFD KGERSSENTH LFGGETDAPA 240 INVDASSRKA NGDLHCKKER NQTAGEDSKQ GSSRVSPRSL SSSTEFSDGS KQQPMVCDFF 300 SKGWCIKGSS CRFVHKRDHM TVSSQYVEGH LNAAEEKTKL VNGKASSIPH ISLEKDDEML 360 GEKSEMKHPL EKNSLRRELS NEDYCHYSSP MAKDSSQNWM ISGSNLTASE NYRNMTNFLN 420 IVPRKINQFM PCDHDSSMPN SSSYKLPLSS SFYSWNPDPA DPEKLLDSNQ NYCGSKLSSL 480 KRGSSSFSTY NLENLSHSDV LNDTQQPVGC KRKISFDWEP SAPFQPSFFI TQRLLASRSL 540 YDPVRDSIEQ TSSSGDGPPK SSYSGLGTSV LGAKLHLDGD LVPKRMLGSE CSFSKCSHSD 600 LSFHANAPIK TFPAKDSSDM DIDAMESPGG QCKNRSLLKE EKLNSDHARD CEEVDEKRRD 660 HDSELQKDGS GNKNEVKEER SGQNAESILD LKADGCTQNS RTLKYFHAAL VEFVKELLKP 720 TWHEGVISKD AYKMIVKKTI GKVLDTLEPH QIPSTSESIK QYLSVSETKL AKLIEAYVDK 780 YRNS |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3004 | 21 | 22 |