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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7417_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 587aa MW: 64594.6 Da PI: 4.2729 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2e-08 | 272 | 320 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE++++ ++v+ + W+ a +++ Rt ++++s+++++ cra_locus_7417_iso_1_len_2139_ver_3 272 EKWSEEEELIFHEVVANSPATlgknFWDYLATEFP-SRTKNEIVSYYFNV 320 58*************8755555555**********.***********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.36E-6 | 269 | 321 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0019 | 270 | 323 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-7 | 272 | 320 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.05E-7 | 273 | 321 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.2E-6 | 273 | 319 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.295 | 273 | 321 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MVQKRPHGEE LYEISSKQPR RLESSDEVVS SLEFPDENVA SNPHALGEFG QFPSKSKPEY 60 DEMLNGGNGA ELRTFLEKEI EASVPASFSN SSWATSKTSE EDIRLEPPFH LVLSPDHQNI 120 VHPTRTIIHV GDLYSSLLEY PPLKPVPVGK DYQAEIPEWG SLGAEQNSIC SEEISEAPNL 180 PSQSSKSDIS GNSDDDSRLA GTCIIPMPDL DISEDNVEKI GAGRINCSCG DEGSIRCVQQ 240 HITEAREKLR AALGEETFVK LGFSDMGEVV SEKWSEEEEL IFHEVVANSP ATLGKNFWDY 300 LATEFPSRTK NEIVSYYFNV FMLKKRALQN RCDPLNIDSD NDEWEETEYS AEYVIDTGKE 360 GYSPGVRSPG YEDAFGHDEF HENVHKSSED GYAKISGNDE YKHLSDNKVI VSENFCVPAF 420 DNHNTVAAFL QSDKFNEDAH EPSKAGAPET AGQGANQNFC ENKVTSNAAE HFSAEGSDNH 480 CSVPTLQPSV GFLLNEPAGQ DVQGGVCAPD NAGMAPEVSS EKADARRHWT GSPRGKGQAF 540 LLEPCSSCKE WEGGYLTRPK NEDFLSTCSM IEEVFGNGSL NDKNSDG |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1514 | 16 | 25 |