PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7403_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GATA
Protein Properties Length: 340aa    MW: 37358.7 Da    PI: 7.341
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7403_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18257290134
                                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                          Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  cra_locus_7403_iso_3_len_1490_ver_3 257 CSHCQVQKTPQWRTGPMGPKTLCNACGVRYKSGR 290
                                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.1E-858338IPR016679Transcription factor, GATA, plant
SMARTSM004013.8E-15251305IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.622251287IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.28E-14255314No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14255288IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.88E-15256313No hitNo description
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
PfamPF003203.0E-16257290IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEFVAERALK SSFLSDFSSK QSQQLCIDDS SAWVAATAGG GGLNSVACDD FSVDDLLDFS  60
DKDFKDGCFQ EDEEKSSLLV SSQHRNSNSS SFSETDDFGS LLAAELVVPA DDLENLEWLS  120
QFVDDSQSEL SMLCPAGSFK DHKTVVNLPA NRSEPGVQKL IGPSFPLPVS RKMRSKRARP  180
NGGRVWSRSP SLTTTETSSI SSSSSYGSSS LSPFVWANPA QDFELFSTVE KPPVKKQKKK  240
QQPTADTTTG SQTLRRCSHC QVQKTPQWRT GPMGPKTLCN ACGVRYKSGR LFPEYRPACS  300
PTFSQEIHSN SHRKVLEMRR KKEGSTGLVE TGFTPMVQSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027159703.11e-126GATA transcription factor 5-like
TrEMBLA0A068TLY91e-122A0A068TLY9_COFCA; GATA transcription factor
STRINGXP_009802570.11e-114(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481