![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_7378_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 397aa MW: 43135.1 Da PI: 7.0886 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.3 | 1.4e-07 | 25 | 66 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 + C+ +++ + lfC++++ ++C +C ++ H H+ cra_locus_7378_iso_4_len_1863_ver_3 25 KQCDYCNSAAALLFCRTDSAFMCISCDSKVHATnklgsrqHE 66 68*******9*******************9965556666665 PP | |||||||
2 | zf-B_box | 26.5 | 1.4e-08 | 68 | 113 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H+++p+ cra_locus_7378_iso_4_len_1863_ver_3 68 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplarrHERSPV 113 689*****************************66888888998875 PP | |||||||
3 | CCT | 70 | 6.2e-24 | 319 | 362 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+a cra_locus_7378_iso_4_len_1863_ver_3 319 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRA 362 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.3E-6 | 22 | 70 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.8E-6 | 25 | 67 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.115 | 27 | 70 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.70E-8 | 27 | 70 | No hit | No description |
PROSITE profile | PS50119 | 10.808 | 66 | 113 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 68 | 113 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.72E-9 | 69 | 113 | No hit | No description |
SMART | SM00336 | 2.3E-10 | 71 | 113 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 7.8E-18 | 319 | 361 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.787 | 319 | 361 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 397 aa Download sequence Send to blast |
MGMQETVGIG GGGKNFPAGW GLVAKQCDYC NSAAALLFCR TDSAFMCISC DSKVHATNKL 60 GSRQHERVWM CEVCEQAPAS VTCKADAAAL CVTCDRDIHS ANPLARRHER SPVVPFYDTA 120 ESVVKSTAAV AAAANFLVPP VHNNGVSENL STCLANDSYV TDSSWISSSD PTAPRVAADG 180 PDLKSMEFLF TDSDNYLDFD YPISSVQQHY SSGNDGVVPV QTTKAPPIPT TQLPVAGHSS 240 EKHFEIDFTK SHMTSYNNSY NPHSLSHSVS SSSLDVGVVP DGSCMSEISY PFGSSNTVDM 300 SGSNGNNQGS STQMVGMDRE ARVLRYREKR KNRKFEKTIR YASRKAYAET RPRIKGRFAK 360 RADQVVESHI DRIFNPNSAS SVTSFIPESR FGVVPSF |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027068408.1 | 1e-175 | zinc finger protein CONSTANS-LIKE 4-like | ||||
TrEMBL | A0A068U441 | 1e-173 | A0A068U441_COFCA; Uncharacterized protein | ||||
STRING | VIT_11s0052g01800.t01 | 1e-131 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |