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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7357_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 18096.3 Da PI: 10.0049 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.3 | 3.1e-06 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H cra_locus_7357_iso_6_len_639_ver_3 94 FVCEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.75E-5 | 92 | 117 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-6 | 93 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 1.8E-5 | 94 | 116 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MMKDLILVHQ QQQSVLEENM SNLTSASNEA SASSSVNRND SGNGSIYPPP QQHYFVPPNQ 60 PPPPKKKRNL PGNPDPDAEV IALSPKALLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 120 KLKQRTSKEI RKKVYVCPET SCVHHDPSRA LGDLTGIKKH X |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 132 | KLKQRTSKEIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027126922.1 | 6e-88 | protein indeterminate-domain 11-like | ||||
Swissprot | Q8H1F5 | 2e-67 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | G7LHG9 | 5e-82 | G7LHG9_MEDTR; C2H2-like zinc finger protein, putative | ||||
STRING | AET01585 | 8e-83 | (Medicago truncatula) |
Publications ? help Back to Top | |||
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