PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_7357_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 25433.9 Da PI: 9.8815 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H cra_locus_7357_iso_4_len_826_ver_3 94 FVCEICNKGFQRDQNLQLHRRGH 116 89*******************88 PP | |||||||
2 | zf-C2H2 | 17 | 1.6e-05 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ cra_locus_7357_iso_4_len_826_ver_3 170 WKCDKCSKKYAVQSDWKAHQKTC 192 58*******************98 PP | |||||||
3 | zf-C2H2 | 10.9 | 0.0015 | 200 | 218 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsr++++ +H + cra_locus_7357_iso_4_len_826_ver_3 200 DCGTIFSRRDSFITHRAFC 218 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-6 | 93 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.0E-8 | 93 | 116 | No hit | No description |
SMART | SM00355 | 0.017 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 94 | 116 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 2.9E-5 | 94 | 116 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 82 | 135 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.6E-6 | 158 | 191 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.0E-8 | 165 | 191 | No hit | No description |
SMART | SM00355 | 94 | 170 | 190 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MMKDLILVHQ QQQSVLEENM SNLTSASNEA SASSSVNRND SGNGSIYPPP QQHYFVPPNQ 60 PPPPKKKRNL PGNPDPDAEV IALSPKALLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW 120 KLRQRTTTEI RKRVYICPEP SCVHHNPARA LGDLTGIKKH YSRKHGEKKW KCDKCSKKYA 180 VQSDWKAHQK TCGTREYKCD CGTIFSRRDS FITHRAFCDA LAE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 166 | 223 | 3 | 60 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 166 | 223 | 3 | 60 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003627109.1 | 1e-132 | protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 1e-115 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | G7LHG9 | 1e-130 | G7LHG9_MEDTR; C2H2-like zinc finger protein, putative | ||||
STRING | AET01585 | 1e-131 | (Medicago truncatula) |
Publications ? help Back to Top | |||
---|---|---|---|
|