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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7319_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 335aa MW: 36211.3 Da PI: 8.9974 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 8.1e-14 | 115 | 159 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky cra_locus_7319_iso_6_len_1484_ver_3 115 PWTEEEHRCFLVGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 159 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.532 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 18.747 | 108 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.72E-18 | 109 | 164 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-18 | 111 | 163 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.8E-11 | 112 | 158 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-10 | 112 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.66E-9 | 115 | 160 | No hit | No description |
Pfam | PF00249 | 1.9E-11 | 115 | 159 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGRKCSHCGN IGHNSRTCTT YRGTHHGGGG GGVLRLFGVQ LHDIPSSSSI SNMMKKSFSL 60 DCLSSSSPAA SSSSPSNSSL SSSRIYINEA SDKMAIGYLS DGLIGRPQER KKGVPWTEEE 120 HRCFLVGLEK LGKGDWRGIS RNFVTTRTPT QVASHAQKYF LRQASLSKKL KRRSSLFDMI 180 ESKSTHNHQA IINDTIGGHD YPRRKGNLHL DDDNDDRVVE GYNINPPLID LNSFGVDQMD 240 GHDQEQCRTS SDHHGNFMAI SWAYDQSPAA GSGHQSQVTS NTTNRMSSMG ASSSNAAAPA 300 PDLELTLAAP KTVAQKKPSP PSSNSILLGP IISVI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027174838.1 | 3e-93 | probable transcription factor At5g61620 | ||||
Swissprot | Q7XC57 | 2e-47 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A068U6I0 | 5e-91 | A0A068U6I0_COFCA; Uncharacterized protein | ||||
STRING | EOY30492 | 2e-80 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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