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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7294_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 387aa MW: 42980.1 Da PI: 7.5291 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.9 | 5.7e-55 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeel+++yL kkv ++++++ ++i evd++kvePwdLp ++k +ekewyfF+ rdkky+tg r+ cra_locus_7294_iso_3_len_1468_ver_3 17 LPPGFRFHPTDEELITHYLSKKVLETNFSA-KAIGEVDMNKVEPWDLPWRAKMGEKEWYFFCVRDKKYPTGLRT 89 79**************************99.89***************888999******************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wv heyrle cra_locus_7294_iso_3_len_1468_ver_3 90 NRATAAGYWKATGKDKEIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVTHEYRLE 143 ********************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-61 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.648 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-28 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MENYSGLIND DDDQLELPPG FRFHPTDEEL ITHYLSKKVL ETNFSAKAIG EVDMNKVEPW 60 DLPWRAKMGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVTHEY RLEGKFSLLN LPKSAKNEWV ICRVFQKTAG GKKVHISGLA 180 RSNSFGNNDL VSSLLPPLMD SSPYNNGNST KSTPVAAESG HVHCFSNSIT AQKSQQEEIF 240 NYFNNNNNNN PFVVSSTNGG YSSSFTNGGY SSWGGQQLLV PPPSIVQGNY QFSPSFQMQD 300 PSILRSLLEN CGQNMMKQGF KIEKDGISGS QETGVSTDIN TEISSVVSNL EMGRKSSLED 360 HQEVPPPSSS SAAAVVGPQD LDCLWGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-54 | 9 | 173 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-54 | 9 | 173 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-54 | 9 | 173 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-54 | 9 | 173 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-54 | 9 | 173 | 12 | 174 | NAC domain-containing protein 19 |
3swm_B | 8e-54 | 9 | 173 | 12 | 174 | NAC domain-containing protein 19 |
3swm_C | 8e-54 | 9 | 173 | 12 | 174 | NAC domain-containing protein 19 |
3swm_D | 8e-54 | 9 | 173 | 12 | 174 | NAC domain-containing protein 19 |
3swp_A | 8e-54 | 9 | 173 | 12 | 174 | NAC domain-containing protein 19 |
3swp_B | 8e-54 | 9 | 173 | 12 | 174 | NAC domain-containing protein 19 |
3swp_C | 8e-54 | 9 | 173 | 12 | 174 | NAC domain-containing protein 19 |
3swp_D | 8e-54 | 9 | 173 | 12 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-54 | 9 | 173 | 9 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-54 | 9 | 173 | 9 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027169747.1 | 1e-179 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-130 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A068UVF5 | 1e-174 | A0A068UVF5_COFCA; Uncharacterized protein | ||||
STRING | EOY21905 | 1e-164 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Publications ? help Back to Top | |||
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