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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7294_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 386aa MW: 42866 Da PI: 7.5291 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.9 | 5.7e-55 | 17 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrFhPtdeel+++yL kkv ++++++ ++i evd++kvePwdLp ++k +ekewyfF+ rdkky+tg r+ cra_locus_7294_iso_2_len_1465_ver_3 17 LPPGFRFHPTDEELITHYLSKKVLETNFSA-KAIGEVDMNKVEPWDLPWRAKMGEKEWYFFCVRDKKYPTGLRT 89 79**************************99.89***************888999******************** PP NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgekt+Wv heyrle cra_locus_7294_iso_2_len_1465_ver_3 90 NRATAAGYWKATGKDKEIFR-GKSLVGMKKTLVFYKGRAPKGEKTNWVTHEYRLE 143 ********************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-61 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.648 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-28 | 18 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MENYSGLIND DDDQLELPPG FRFHPTDEEL ITHYLSKKVL ETNFSAKAIG EVDMNKVEPW 60 DLPWRAKMGE KEWYFFCVRD KKYPTGLRTN RATAAGYWKA TGKDKEIFRG KSLVGMKKTL 120 VFYKGRAPKG EKTNWVTHEY RLEGKFSLLN LPKSAKNEWV ICRVFQKTAG GKKVHISGLA 180 RSNSFGNNDL VSSLLPPLMD SSPYNNGNST KSTPVAAESG HVHCFSNSIT AQKSQQEEIF 240 NYFNNNNNNP FVVSSTNGGY SSSFTNGGYS SWGGQQLLVP PPSIVQGNYQ FSPSFQMQDP 300 SILRSLLENC GQNMMKQGFK IEKDGISGSQ ETGVSTDINT EISSVVSNLE MGRKSSLEDH 360 QEVPPPSSSS AAAVVGPQDL DCLWGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-54 | 9 | 173 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-54 | 9 | 173 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-54 | 9 | 173 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-54 | 9 | 173 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 7e-54 | 9 | 173 | 9 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-54 | 9 | 173 | 9 | 171 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027169747.1 | 1e-179 | NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-130 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A068UVF5 | 1e-174 | A0A068UVF5_COFCA; Uncharacterized protein | ||||
STRING | EOY21905 | 1e-164 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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