PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7256_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NF-YA | ||||||||
Protein Properties | Length: 368aa MW: 41584.8 Da PI: 9.5279 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 101.9 | 6.1e-32 | 176 | 232 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh+hA++R+RgsgGrF cra_locus_7256_iso_3_len_1101_ver_3 176 DEPIYVNAKQYKAILRRRQFRAKLEAQNKL-SKARKPYLHESRHRHAINRARGSGGRF 232 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.1E-36 | 174 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.27 | 175 | 235 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.7E-27 | 177 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.2E-23 | 178 | 200 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 180 | 200 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.2E-23 | 209 | 232 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
XESDAQESTL SRNLSNKMMN PSEHCQTSKQ LGVYFQDQDS SSTQSTGQSY CEVVNIETKG 60 YGKDTLLAGS CITNIKASEN QSKSAISYQD HDLPHSPIHY RQLACFPLPY PDPGIQFAET 120 VYELSTYYIX HTSSRGCWRE SPLDAPMRYF PFKFVQVHSQ MVGTRVPLPL DHPPHDEPIY 180 VNAKQYKAIL RRRQFRAKLE AQNKLSKARK PYLHESRHRH AINRARGSGG RFLNTKKSPE 240 SKLPSSSNAN NDQDISDSMQ LHLNTKSMVL TSSEITSSSI IDEASFSRPR EYYRFSGGSL 300 AAAGEMGMVS STRQYLSVLQ XSKRLEQQQQ QQSLNVLLLI KKREVILGLF IYHCRNVSTR 360 TSGSLVGX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-21 | 176 | 246 | 2 | 74 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6R0G1 | 3e-66 | A0A2R6R0G1_ACTCH; Nuclear transcription factor Y subunit A-3 like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13966 | 11 | 14 |