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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7205_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 282aa MW: 31138.1 Da PI: 4.6666 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g+W++++ g Rt++++k++w+++l cra_locus_7205_iso_2_len_1351_ver_3 14 KGPWTPEEDIMLVSYVQEYGPGNWRAVPTNTGledaiasylPERTDNDIKNYWNTHL 70 79************************9999999999999999************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.94E-16 | 8 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.274 | 9 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 13 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 13 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-8 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.13E-15 | 16 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGRPPCCDKV GVKKGPWTPE EDIMLVSYVQ EYGPGNWRAV PTNTGLEDAI ASYLPERTDN 60 DIKNYWNTHL KKKLKMLQTG PDPCSRNGFS SSQSASKGQW ERRLQADIKT AKQALQDALT 120 LDGTSSPVPD SKGLFSLAET GGQASNNSNT YASSTENIAR LLKDWARNSS NSKSKKQSKS 180 SSTQHSFNYP ANEYSTSSSV ESKNGIELSE AFESLFGFES FDSSNSEFSQ STSPEASLFQ 240 GESKPEITQV PLAMLENWLF DESSIQGKDL TNFSFDHDED LF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 69 | 75 | LKKKLKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00395 | DAP | Transfer from AT3G47600 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028109092.1 | 1e-104 | myb-related protein 306-like | ||||
Swissprot | P81392 | 3e-74 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A2N9FVI2 | 1e-102 | A0A2N9FVI2_FAGSY; Uncharacterized protein | ||||
STRING | VIT_14s0108g00830.t01 | 4e-96 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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