PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CAMTA

Protein Properties

Length: 1076aa MW: 122221 Da PI: 7.943

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_7165_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	160.2	3.8e-50	47	159	3	114
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 +e k+rwl+++ei+aiL n++ ++++ ++ + p sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKv cra_locus_7165_iso_3_len_3668_ver_3 47 EEaKARWLRPNEIHAILYNYKYFNVQVKPVNLPASGTMVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKV 120 45599******************************************************************* PP CG-1 76 ggvevlycyYahseenptfqrrcywlLeeelekivlvhy 114 g+ e +++yYah+e+nptf rrcywlL+++le+ivlv y cra_locus_7165_iso_3_len_3668_ver_3 121 GNEERIHVYYAHGEDNPTFVRRCYWLLDKSLEHIVLVPY 159 ***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	72.074	42	168	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-71	45	163	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-44	48	160	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	5.04E-10	446	532	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	2.34E-12	625	733	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.5E-14	628	695	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.48E-7	630	694	No hit	No description
PROSITE profile	PS50297	9.463	639	694	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.34E-12	762	823	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.5E-14	777	824	IPR020683	Ankyrin repeat-containing domain
SMART	SM00015	430	873	897	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	8.32E-6	876	977	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.035	911	937	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	61	926	948	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.346	927	956	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0019	949	971	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.834	950	974	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.2E-4	951	971	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	14	1029	1051	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.297	1031	1059	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1076 aa Download sequence Send to blast
LKXSVGDSSR VEKEFISMDN IIAGRLVGTE IHGFRTMGDL DMANILEEAK ARWLRPNEIH 60 AILYNYKYFN VQVKPVNLPA SGTMVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV 120 GNEERIHVYY AHGEDNPTFV RRCYWLLDKS LEHIVLVPYF XILSLDISIL LMIKFLMHFY 180 DHDIFGLKSF LIRILYQVPG THSPCSLSGN SRGAASPATP GNSNSSSGNS DPSASLVLSE 240 ESDSVVDRAY YTSHRADLVQ DESANIKDHE LRLHEINTLE WDDLLVPDDS NRRITTQEGG 300 YSVRLPYQYE TNGYRINSLP ANKLPAEDYL VNFPGLGLGN PVNNFNVPAD IGRQSMQGQI 360 TSTSLQNNFG KTALSLGNSI DNLIKDGLQT QDSFGRWIND IIIESPVSAD DMTLGSSVST 420 SHQSFTSPSM GPNLSSIPEQ YQIFYITDIS PSWASSTEPT KILVVGFFHE GLADVVKSSV 480 FCNCGDVCAP ATAIQPGVFR ILIPPQAPGV VDLFLSFDAE KPISQVVTFE FRAPRIENNL 540 ISSSEKSNWE EFQVQLRLAR LLFSTSRIFD IVSSKISPYT LKEAKTFARK TSNIADGWTR 600 LDKSIKAKEV PFPEAKDSLF ELTLQNRLYE WLLERVIEGC KITERDEQGQ GVIHLCAILG 660 YTWAVYPFSW SGLSLDYRDK LGWTALHWAA YYGRXAPAFA FSFCLIVCYC SPLXPCYXCA 720 HTHTHIYIFH RLFFLIRIRE RILSSAYGQY YRCSYLILMF IWNVCIGYYC NYDVREKMVA 780 KLLSAGAKAN LVSDPTSENP GGCTAADLAS KNGHEGLAAY LAEKALVQHF EAMTLAGNVS 840 GSLQAPAAID SENPGNFTEE ELNLKETLAA YRTAADAAAR IQAAFREHSF KVRSKVVESS 900 NPELEARNII AAMKIQHAFR NYETRKQMAA AARIQYRFRT WKMRRDFLNM RRQAIKIQSV 960 FRGFQVRRQY RKIIWSVGVL EKAILRWRLK RKGFRGLQVQ SDEAVKDQTQ ASDTEEDFFH 1020 ASRKQAEERV ERSVVRVQAM FRSKHAQEEY RRMKLEHNSA TLEYQELQNP DEMREV

Sequence ? help Back to Top

Protein Sequence Length: 1076 aa Download sequence Send to blast

LKXSVGDSSR VEKEFISMDN IIAGRLVGTE IHGFRTMGDL DMANILEEAK ARWLRPNEIH  60
AILYNYKYFN VQVKPVNLPA SGTMVLFDRK MLRNFRKDGH NWKKKKDGKT VKEAHEHLKV  120
GNEERIHVYY AHGEDNPTFV RRCYWLLDKS LEHIVLVPYF XILSLDISIL LMIKFLMHFY  180
DHDIFGLKSF LIRILYQVPG THSPCSLSGN SRGAASPATP GNSNSSSGNS DPSASLVLSE  240
ESDSVVDRAY YTSHRADLVQ DESANIKDHE LRLHEINTLE WDDLLVPDDS NRRITTQEGG  300
YSVRLPYQYE TNGYRINSLP ANKLPAEDYL VNFPGLGLGN PVNNFNVPAD IGRQSMQGQI  360
TSTSLQNNFG KTALSLGNSI DNLIKDGLQT QDSFGRWIND IIIESPVSAD DMTLGSSVST  420
SHQSFTSPSM GPNLSSIPEQ YQIFYITDIS PSWASSTEPT KILVVGFFHE GLADVVKSSV  480
FCNCGDVCAP ATAIQPGVFR ILIPPQAPGV VDLFLSFDAE KPISQVVTFE FRAPRIENNL  540
ISSSEKSNWE EFQVQLRLAR LLFSTSRIFD IVSSKISPYT LKEAKTFARK TSNIADGWTR  600
LDKSIKAKEV PFPEAKDSLF ELTLQNRLYE WLLERVIEGC KITERDEQGQ GVIHLCAILG  660
YTWAVYPFSW SGLSLDYRDK LGWTALHWAA YYGRXAPAFA FSFCLIVCYC SPLXPCYXCA  720
HTHTHIYIFH RLFFLIRIRE RILSSAYGQY YRCSYLILMF IWNVCIGYYC NYDVREKMVA  780
KLLSAGAKAN LVSDPTSENP GGCTAADLAS KNGHEGLAAY LAEKALVQHF EAMTLAGNVS  840
GSLQAPAAID SENPGNFTEE ELNLKETLAA YRTAADAAAR IQAAFREHSF KVRSKVVESS  900
NPELEARNII AAMKIQHAFR NYETRKQMAA AARIQYRFRT WKMRRDFLNM RRQAIKIQSV  960
FRGFQVRRQY RKIIWSVGVL EKAILRWRLK RKGFRGLQVQ SDEAVKDQTQ ASDTEEDFFH  1020
ASRKQAEERV ERSVVRVQAM FRSKHAQEEY RRMKLEHNSA TLEYQELQNP DEMREV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027115917.1	0.0	calmodulin-binding transcription activator 5-like
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A068TRD5	0.0	A0A068TRD5_COFCA; Uncharacterized protein
STRING	Migut.G00093.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4565	22	32

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]