![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_7055_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 1031aa MW: 115310 Da PI: 6.8959 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.5 | 6.5e-29 | 720 | 770 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ cra_locus_7055_iso_6_len_6864_ver_3 720 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 770 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.268 | 709 | 790 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-24 | 722 | 770 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 9.81E-24 | 926 | 1015 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.1E-24 | 930 | 1012 | No hit | No description |
SMART | SM00666 | 3.6E-29 | 933 | 1016 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 24.965 | 933 | 1016 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.14E-40 | 934 | 1014 | No hit | No description |
Pfam | PF00564 | 6.3E-19 | 934 | 1013 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1031 aa Download sequence Send to blast |
SSSEIFCKNC KEIFIDDVYA TDRTDWVLED NRKESLLEVP LLVFHIHTPS LLWFLIPFLF 60 HLGDLLGMFK MQVXDLKFSG MGDGAFKPNT TMLGSLPENT MDFGLIDELL IDGFWLETTD 120 DSNFWQPGPS TYLDNSSSFY SQTSDINITH FNSNLNQASF SEEEKHSNLT DNRYPIHIQG 180 DQVVAEQSPK KESILHSAST NHSKSFLVEG TEMNRRLWIG PNRNLTPNAL VRSRLVQAIE 240 YLKDSTRDKD VLIQLWVPVK RGGKKVLTTN NQPFSFNPNH KSLAEYRHVS KNYQFALEED 300 SKEFLGLPGR VFLKKLPEWT PDVRFFKREE YPRVNHAQQY NIGGSIALPV FERGSGACLG 360 VVEIISTSQM LSHRPELESV CKALEAVDLK SSDISVPPEA KDCNESYRVA LAEIKDVLQC 420 VCDLHKLPLA QTWVPCNQQG KGGCRHSDET YADCVSTVDS ACYVRDPQVW EFHVACSEHH 480 LLKGEGVAGG AFTTNQPCFA TDITAFSKTE YPLSHHAKLF HFCAAVAVRL RSIYTGSADF 540 VLEFFLPLDC RDAESQKQML NSLSLVIQQI CRSLRVVTDQ ELKEEVAPPT VKRKFSSGNK 600 FDKEESPASI SPSKKSSQDA SSWIAMATSM GDEGKGKGLA FSLDSHKKEA EGGEFKLTPY 660 WDKNPPELHQ MPSITDHTQI QQSSGLRENA SGSCEYSLTR EHHHYSGTRR ASERRRTKTE 720 KTISLQVLRQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV 780 IDSVQGAEGS IQLSSFYNNF PQLSSTSLAS PSQLPSNTSD DQQKLSPATT ASKSPSSSAS 840 HSSSSSFCCS VGATQSNFPV NSSSVKDDSS AEQCIETLKR AHSDAELQNM VQGGTKLLVR 900 SQSHKILPQD VSLEPLPPLP TKASNQLVQD GSTLRVKAAF GDEKIRFSIQ PNWGFETLLQ 960 EVRRRFNIDD ANRIDLKYLD DDSEWVLLTC DADLEECIDI HKSSRSRTIK LSLNLPYHRN 1020 LPGSFGSRVL S |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027151391.1 | 0.0 | protein NLP2-like isoform X1 | ||||
Refseq | XP_027184525.1 | 0.0 | protein NLP2-like isoform X1 | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | A0A2G9HB62 | 0.0 | A0A2G9HB62_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B00011.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |