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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_7006_iso_1 | ||||||||
Common Name | zct1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 152aa MW: 16665.4 Da PI: 9.6957 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00091 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg F+ L H+r+H cra_locus_7006_iso_1_len_947_ver_3 63 HACSICGLEFPLGQALGGHMRRH 85 67********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.22E-9 | 16 | 85 | No hit | No description |
SMART | SM00355 | 0.91 | 18 | 40 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-10 | 18 | 42 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.515 | 18 | 45 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 20 | 40 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.5E-10 | 62 | 87 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.203 | 63 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.31 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEKSAVPALK PGAGGRIYEC KTCKKQFLTF QALGGHRASH KKLRLMAADL LHQSLAVTKP 60 KTHACSICGL EFPLGQALGG HMRRHRGAAL DGEKPVVVSD KPVAKAVPFL MRSNSSKRIF 120 GFEVDGLDLN LTPEDNDPDE RDKFPPLLEF FV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027063234.1 | 5e-45 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 5e-29 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | Q5TJD6 | 1e-107 | Q5TJD6_CATRO; Zinc finger DNA-binding protein | ||||
STRING | XP_006480743.1 | 3e-37 | (Citrus sinensis) | ||||
STRING | POPTR_0010s21650.1 | 3e-37 | (Populus trichocarpa) | ||||
STRING | XP_002533000.1 | 5e-37 | (Ricinus communis) | ||||
STRING | XP_006429010.1 | 3e-37 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Publications ? help Back to Top | |||
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