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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6959_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 271aa MW: 30032.8 Da PI: 8.0775 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.3 | 4e-34 | 22 | 76 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl cra_locus_6959_iso_5_len_2125_ver_3 22 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 76 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.337 | 19 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-32 | 21 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-18 | 21 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-26 | 22 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-9 | 24 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-23 | 108 | 154 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDFMGGGNNN MNNSNNSNLA SKQRLRWTNE LHERFVDAVA QLGGPDRATP KGVLRVMGVQ 60 GLTIYHVKSH LQKYRLAKYL PDSSSDGKKT DKKDSKEMLS NLDGSSGMQI TEALKLQMEV 120 QKRLHEQLEV QKQLQLRIEA QGKYLKKIIE EQQRLSGVLS DAPSAGVTAN QLGDNCPESE 180 IRNDPGTPPP TSESPVMDKP SKERAAAKSF SLDESFSSPQ EPQTPESGCR INLFENMDAD 240 RSSKKQRLSP SGLPPQISNV CPPFEQPHSI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-25 | 22 | 79 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-25 | 22 | 79 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-25 | 22 | 79 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-25 | 22 | 79 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006349121.1 | 1e-138 | PREDICTED: myb family transcription factor APL-like | ||||
Refseq | XP_006349122.1 | 1e-138 | PREDICTED: myb family transcription factor APL-like | ||||
Refseq | XP_015164958.1 | 1e-138 | PREDICTED: myb family transcription factor APL-like | ||||
Swissprot | Q9SJW0 | 1e-114 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | M1ABL4 | 1e-136 | M1ABL4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400019099 | 1e-137 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2796 | 24 | 51 |