 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_6945_iso_7 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 293aa MW: 32841.8 Da PI: 5.8752 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_6945_iso_7 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.7 | 4.7e-19 | 149 | 203 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tk+q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k
cra_locus_6945_iso_7_len_1117_ver_3 149 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 203
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 123.8 | 8.1e-40 | 149 | 238 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74
+kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+
cra_locus_6945_iso_7_len_1117_ver_3 149 RKKLRLTKSQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLT 222
69************************************************************************ PP
HD-ZIP_I/II 75 eenerLekeveeLreel 91
+en+rL+ke +eL+ +l
cra_locus_6945_iso_7_len_1117_ver_3 223 DENRRLQKELQELK-AL 238
*************9.54 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009735 | Biological Process | response to cytokinin |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MALDDFSSPG LVLGLGFPSS TAAAVAADNN KFVTKIRPKE TNPTTTTTVS FEPSLTLSLI 60
SGDFYDDDDD DKIAKKVEEI NNFNKNLNDN SVVVHDLLYR QDSAASSFSN VSVKREREIC 120
TTGSEELEVE RVISSSRVSD EDDDGSNGRK KLRLTKSQSA LLEESFKQHS TLNPKQKQDL 180
ARELNLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKKCCET LTDENRRLQK ELQELKALKL 240
SQPFYMQLPA ATLTMCPSCE RIGGENTGPK GPSFPMASKP HFYNPFTNQS AAC
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 197 | 205 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
