 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_68077_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 166aa MW: 19290.3 Da PI: 6.0314 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_68077_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 48.4 | 1.2e-15 | 2 | 32 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
lKKA+E+SvLCda+v +i+fs++gkl+ey++
cra_locus_68077_iso_1_len_495_ver_3 2 LKKAHEISVLCDADVGLIVFSTKGKLFEYAT 32
8****************************86 PP
|
| 2 | K-box | 95 | 1.2e-31 | 50 | 147 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76
+s+ ++ + + s++ ++akLk ++e Lqr+qRh++GedL+sL lkeLq+Le+qL++slk+i s++n+l++e
cra_locus_68077_iso_1_len_495_ver_3 50 ESQLTAPHPESLGSWTLKHAKLKTRMEVLQRNQRHYMGEDLDSLCLKELQNLERQLDSSLKNIGSRQNQLMHEA 123
56666666677889************************************************************ PP
K-box 77 ieelqkkekelqeenkaLrkklee 100
i elqkk k+lqe+n+ L k+++e
cra_locus_68077_iso_1_len_495_ver_3 124 IAELQKKDKALQEQNNLLAKEIKE 147
********************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 166 aa
Download sequence Send
to blast |
XLKKAHEISV LCDADVGLIV FSTKGKLFEY ATDSCMERIL ERYETSSYSE SQLTAPHPES 60
LGSWTLKHAK LKTRMEVLQR NQRHYMGEDL DSLCLKELQN LERQLDSSLK NIGSRQNQLM 120
HEAIAELQKK DKALQEQNNL LAKEIKEKEQ ELVRTSTPWQ EQNYDX
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 7e-15 | 48 | 141 | 1 | 97 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 7e-15 | 48 | 141 | 1 | 97 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 7e-15 | 48 | 141 | 1 | 97 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 7e-15 | 48 | 141 | 1 | 97 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
