 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_6749_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
Trihelix |
| Protein Properties |
Length: 196aa MW: 22053.1 Da PI: 10.623 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_6749_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 81.4 | 1.3e-25 | 44 | 125 | 1 | 73 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
rWt+qe+l+Li++++ e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kk
cra_locus_6749_iso_1_len_1267_ver_3 44 RWTRQEILVLIQGKKVAENRVRRGRtaglafgsaQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKKS 117
8**********************866677777779*************************************** PP
trihelix 66 egekkrts 73
eg+k+++
cra_locus_6749_iso_1_len_1267_ver_3 118 EGKKRKRH 125
**999744 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0050777 | Biological Process | negative regulation of immune response |
| GO:0071219 | Biological Process | cellular response to molecule of bacterial origin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MAFEQLRLAP AAAVDDTSPA AAVNGRQLHL DVPDDAAKVP RLPRWTRQEI LVLIQGKKVA 60
ENRVRRGRTA GLAFGSAQVE PKWASVSSYC KRHGVNRGPV QCRKRWSNLA GDFKKKSEGK 120
KRKRHTVQVD EEDETRNLQD QLVEVLERNG TLLSSQLESQ NIHLQLEREQ RKDHVNSLIS 180
VLNKLADALG RIADKL
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 102 | 123 | RKRWSNLAGDFKKKSEGKKRKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
