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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6720_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 246aa MW: 27503 Da PI: 6.1657 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.3 | 3.9e-33 | 47 | 133 | 50 | 128 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk........kgelvglkktLvfykgrapkg 116 +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ + +l+g+kktLvfy+grapkg cra_locus_6720_iso_4_len_869_ver_3 47 VIKTDDPEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRksspsgqsNPQLIGMKKTLVFYRGRAPKG 121 4667888**************************************9666655544455***************** PP NAM 117 ektdWvmheyrl 128 e+t+W+mheyr+ cra_locus_6720_iso_4_len_869_ver_3 122 ERTNWIMHEYRA 133 **********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.161 | 1 | 156 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.27E-39 | 43 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-17 | 51 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
AEKKKGNVFL KWFSNGVQTA VXIFCYWNXV ACPAGTDTLL LLTGLSVIKT DDPEWFFFCP 60 RDRKYPNGHR SNRATDAGYW KATGKDRTIK SRKSSPSGQS NPQLIGMKKT LVFYRGRAPK 120 GERTNWIMHE YRATETDLDG TAPDQAAYVL CRLFHKPDEK TDNSKDDEAE HTGSSPTTVR 180 SSPDDTSSDL FQEQPILDME VGKQPEGMTR WLTDKSDEMT SNSHAHVESC MSDAEDHSTG 240 AAGTEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-30 | 54 | 156 | 72 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-30 | 54 | 156 | 72 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-30 | 54 | 156 | 72 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-30 | 54 | 156 | 72 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-30 | 54 | 156 | 75 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 54 | 156 | 75 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 54 | 156 | 75 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 54 | 156 | 75 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 54 | 156 | 75 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 54 | 156 | 75 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 54 | 156 | 75 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 54 | 156 | 75 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-30 | 54 | 156 | 72 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-30 | 54 | 156 | 72 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027081653.1 | 1e-107 | protein NTM1-like 9 isoform X1 | ||||
Refseq | XP_027081654.1 | 1e-107 | protein NTM1-like 9 isoform X1 | ||||
Refseq | XP_027181236.1 | 1e-107 | protein NTM1-like 9 | ||||
Swissprot | F4JN35 | 1e-74 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A068UVE1 | 1e-105 | A0A068UVE1_COFCA; Uncharacterized protein | ||||
STRING | XP_008360722.1 | 1e-85 | (Malus domestica) | ||||
STRING | XP_010056056.1 | 2e-86 | (Eucalyptus grandis) |
Publications ? help Back to Top | |||
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